Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HRD69_RS03420 Genome accession   NZ_CP054043
Coordinates   781307..781855 (-) Length   182 a.a.
NCBI ID   WP_004876410.1    Uniprot ID   -
Organism   Yersinia mollaretii ATCC 43969     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 776307..786855
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HRD69_RS03405 (HRD69_03405) - 776821..778470 (-) 1650 WP_032815128.1 Na+/H+ antiporter -
  HRD69_RS03410 (HRD69_03410) - 778669..780036 (-) 1368 WP_004876414.1 NCS2 family permease -
  HRD69_RS03415 (HRD69_03415) - 780400..781068 (-) 669 WP_004876412.1 glutathione S-transferase -
  HRD69_RS03420 (HRD69_03420) ssb 781307..781855 (-) 549 WP_004876410.1 single-stranded DNA-binding protein SSB1 Machinery gene
  HRD69_RS03425 (HRD69_03425) uvrA 782156..784987 (+) 2832 WP_004876409.1 excinuclease ABC subunit UvrA -
  HRD69_RS03430 (HRD69_03430) - 785051..785404 (-) 354 WP_004876407.1 MmcQ/YjbR family DNA-binding protein -

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 19088.09 Da        Isoelectric Point: 4.9663

>NTDB_id=450269 HRD69_RS03420 WP_004876410.1 781307..781855(-) (ssb) [Yersinia mollaretii ATCC 43969]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEQKEKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGALQTRKWTDQAGVEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGASQEGGAQGGWGQPQQPQGGNQFSGGQTSRPAQS
APAAQPQGGNEPPMDFDDDIPF

Nucleotide


Download         Length: 549 bp        

>NTDB_id=450269 HRD69_RS03420 WP_004876410.1 781307..781855(-) (ssb) [Yersinia mollaretii ATCC 43969]
ATGGCCAGCAGAGGCGTAAACAAAGTGATTTTGGTCGGGAATTTGGGCCAAGACCCGGAAGTCCGCTACATGCCTAACGG
CGGCGCTGTTGCCAATATCACCCTGGCGACTTCCGAAAGCTGGCGTGATAAAGCAACCGGCGAGCAGAAAGAGAAGACGG
AATGGCACCGTGTGGTGTTGTTCGGCAAACTGGCTGAAGTTGCGGGTGAATATCTGCGTAAAGGCTCTCAAGTCTATATC
GAAGGCGCTCTACAAACCCGTAAGTGGACAGATCAGGCGGGTGTTGAGAAATACACCACTGAAGTTGTGGTTAACGTTGG
CGGCACCATGCAAATGCTAGGTGGTCGTCAAGGCGGCGGTGCTCCGGCAGGGGGTGGCGCCTCACAAGAGGGCGGCGCGC
AAGGCGGTTGGGGTCAACCTCAGCAGCCACAAGGTGGCAACCAGTTCAGCGGCGGCCAGACTTCACGCCCAGCGCAATCT
GCGCCAGCAGCACAGCCGCAAGGCGGCAATGAGCCACCAATGGATTTCGACGACGATATTCCTTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

73.913

100

0.747
  ssb Glaesserella parasuis strain SC1401

55.729

100

0.588
  ssb Neisseria meningitidis MC58

46.703

100

0.467
  ssb Neisseria gonorrhoeae MS11

46.703

100

0.467