Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   FE844_RS05595 Genome accession   NZ_CP054031
Coordinates   1103800..1104312 (+) Length   170 a.a.
NCBI ID   WP_138329483.1    Uniprot ID   -
Organism   Rhizobium indicum strain JKLM 13E     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1098800..1109312
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FE844_RS05580 (FE844_005580) - 1099307..1100113 (-) 807 WP_138329486.1 DUF72 domain-containing protein -
  FE844_RS05585 (FE844_005585) - 1100138..1100599 (-) 462 WP_138329485.1 GNAT family N-acetyltransferase -
  FE844_RS05590 (FE844_005590) uvrA 1100596..1103517 (-) 2922 WP_138329484.1 excinuclease ABC subunit UvrA -
  FE844_RS05595 (FE844_005595) ssb 1103800..1104312 (+) 513 WP_138329483.1 single-stranded DNA-binding protein Machinery gene
  FE844_RS05600 (FE844_005600) - 1104442..1105089 (-) 648 WP_029875185.1 MarC family protein -
  FE844_RS05605 (FE844_005605) gyrA 1105326..1108163 (+) 2838 WP_138329482.1 DNA gyrase subunit A -
  FE844_RS37135 - 1108327..1108461 (-) 135 WP_260298902.1 hypothetical protein -
  FE844_RS05610 (FE844_005610) - 1108498..1108653 (-) 156 WP_173862938.1 hypothetical protein -
  FE844_RS05615 (FE844_005615) - 1108776..1109064 (-) 289 Protein_1111 hypothetical protein -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18167.90 Da        Isoelectric Point: 5.3175

>NTDB_id=450255 FE844_RS05595 WP_138329483.1 1103800..1104312(+) (ssb) [Rhizobium indicum strain JKLM 13E]
MAGSVNKVILIGNVGADPEIRRTQDGRPIANLRIATSETWRDRNSGERREKTEWHTVVVFNEGLCKVVEQYVKKGAKLYI
EGQLQTRKWQDQQGQDRYSTEVVLQGFGSTLTMLDGRGEGGGASGGRGSAGGGNDYGDDYGAPAPASSPSRGGGSGGGNF
SRDLDDDIPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=450255 FE844_RS05595 WP_138329483.1 1103800..1104312(+) (ssb) [Rhizobium indicum strain JKLM 13E]
ATGGCTGGTAGTGTGAATAAGGTAATTCTGATTGGAAACGTCGGTGCGGACCCCGAAATCCGTCGCACTCAGGATGGCCG
GCCGATCGCCAATCTTCGTATCGCGACCTCGGAGACCTGGCGCGACCGCAATTCCGGCGAGCGCCGTGAGAAGACCGAAT
GGCACACCGTCGTCGTCTTCAACGAGGGCCTCTGCAAGGTCGTCGAACAATATGTGAAGAAGGGCGCCAAGCTCTATATC
GAAGGCCAGCTGCAGACCCGCAAGTGGCAGGACCAGCAGGGCCAGGATCGCTACAGCACGGAAGTGGTGCTGCAGGGTTT
CGGTTCGACGCTGACGATGCTCGACGGCCGTGGTGAAGGCGGCGGCGCGAGCGGCGGCCGTGGCAGTGCCGGTGGCGGCA
ACGATTATGGCGACGATTACGGCGCCCCGGCTCCCGCTTCATCGCCGAGCCGCGGCGGTGGCAGCGGCGGCGGCAACTTC
TCGCGGGATCTCGACGACGACATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

44.792

100

0.506
  ssb Vibrio cholerae strain A1552

49.711

100

0.506
  ssb Neisseria meningitidis MC58

37.989

100

0.4
  ssb Neisseria gonorrhoeae MS11

37.989

100

0.4