Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   FFM81_RS10820 Genome accession   NZ_CP054027
Coordinates   2264804..2265313 (-) Length   169 a.a.
NCBI ID   WP_025416164.1    Uniprot ID   -
Organism   Rhizobium hidalgonense strain JKLM 19E     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2259804..2270313
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FFM81_RS10800 (FFM81_010800) - 2260124..2260381 (+) 258 WP_343073718.1 hypothetical protein -
  FFM81_RS10805 (FFM81_010805) - 2260524..2260679 (+) 156 WP_003573160.1 hypothetical protein -
  FFM81_RS10810 (FFM81_010810) gyrA 2261010..2263832 (-) 2823 WP_138384294.1 DNA gyrase subunit A -
  FFM81_RS10815 (FFM81_010815) - 2264069..2264716 (+) 648 WP_138384295.1 MarC family protein -
  FFM81_RS10820 (FFM81_010820) ssb 2264804..2265313 (-) 510 WP_025416164.1 single-stranded DNA-binding protein Machinery gene
  FFM81_RS10825 (FFM81_010825) uvrA 2265597..2268518 (+) 2922 WP_138384296.1 excinuclease ABC subunit UvrA -
  FFM81_RS10830 (FFM81_010830) - 2268515..2268723 (+) 209 Protein_2160 hypothetical protein -
  FFM81_RS10835 (FFM81_010835) - 2268751..2269557 (+) 807 WP_003573170.1 DUF72 domain-containing protein -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 18199.90 Da        Isoelectric Point: 5.3175

>NTDB_id=450249 FFM81_RS10820 WP_025416164.1 2264804..2265313(-) (ssb) [Rhizobium hidalgonense strain JKLM 19E]
MAGSVNKVILIGNVGADPEIRRTQDGRPIANLRIATSETWRDRNSGERREKTEWHTVVVFNEGLCKVVEQYVKKGAKLYI
EGQLQTRKWQDQQGQDRYSTEVVLQGFGSTLTMLDGRGEGGGASSGGGRGSSNNDYGDDYGAPAPSSSPSRGGGGGGNFS
RDLDDDIPF

Nucleotide


Download         Length: 510 bp        

>NTDB_id=450249 FFM81_RS10820 WP_025416164.1 2264804..2265313(-) (ssb) [Rhizobium hidalgonense strain JKLM 19E]
ATGGCTGGTAGCGTAAACAAGGTAATTCTGATTGGAAACGTCGGTGCGGACCCGGAAATCCGCCGCACTCAGGATGGCCG
GCCGATCGCCAATCTTCGTATCGCGACCTCGGAGACCTGGCGCGACCGCAATTCCGGCGAGCGCCGTGAAAAGACCGAAT
GGCACACCGTCGTGGTCTTCAACGAGGGCCTCTGTAAGGTCGTTGAACAATATGTGAAGAAGGGCGCCAAGCTTTATATC
GAAGGCCAGTTGCAGACCCGCAAGTGGCAGGACCAGCAGGGCCAGGACCGCTACTCCACTGAAGTGGTGCTGCAGGGCTT
CGGCTCGACGCTGACCATGCTCGACGGCCGCGGTGAAGGCGGCGGTGCAAGCTCCGGCGGCGGCCGTGGCAGCAGCAACA
ATGATTACGGCGACGATTACGGCGCCCCGGCTCCCTCCTCATCGCCGAGCCGCGGCGGTGGTGGCGGCGGTAACTTCTCG
CGCGATCTCGACGACGACATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

49.711

100

0.509
  ssb Glaesserella parasuis strain SC1401

43.455

100

0.491
  ssb Neisseria gonorrhoeae MS11

39.665

100

0.42
  ssb Neisseria meningitidis MC58

39.665

100

0.42