Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   FFM53_RS01605 Genome accession   NZ_CP054021
Coordinates   333652..334161 (-) Length   169 a.a.
NCBI ID   WP_138389200.1    Uniprot ID   -
Organism   Rhizobium indicum strain JKLM 12A2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 328652..339161
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FFM53_RS01585 (FFM53_001585) - 328727..328882 (+) 156 WP_003539654.1 hypothetical protein -
  FFM53_RS36795 - 328919..329053 (+) 135 WP_018445350.1 hypothetical protein -
  FFM53_RS01590 (FFM53_001590) gyrA 329216..332053 (-) 2838 WP_138389198.1 DNA gyrase subunit A -
  FFM53_RS01595 (FFM53_001595) - 332290..332937 (+) 648 WP_029875185.1 MarC family protein -
  FFM53_RS01600 (FFM53_001600) - 332960..333505 (-) 546 WP_138389199.1 hypothetical protein -
  FFM53_RS01605 (FFM53_001605) ssb 333652..334161 (-) 510 WP_138389200.1 single-stranded DNA-binding protein Machinery gene
  FFM53_RS01610 (FFM53_001610) uvrA 334444..337365 (+) 2922 WP_138389201.1 excinuclease ABC subunit UvrA -
  FFM53_RS01615 (FFM53_001615) - 337362..337823 (+) 462 WP_138389202.1 N-acetyltransferase -
  FFM53_RS01620 (FFM53_001620) - 337848..338654 (+) 807 WP_138389203.1 DUF72 domain-containing protein -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 18110.85 Da        Isoelectric Point: 5.3175

>NTDB_id=450240 FFM53_RS01605 WP_138389200.1 333652..334161(-) (ssb) [Rhizobium indicum strain JKLM 12A2]
MAGSVNKVILIGNVGADPEIRRTQDGRPIANLRIATSETWRDRNSGERREKTEWHTVVVFNEGLCKVVEQYVKKGAKLYI
EGQLQTRKWQDQQGQDRYSTEVVLQGFGSTLTMLDGRGEGGGASGGRGSAGGGNDYGDDYGAPAPASSPSRGGGSGGNFS
RDLDDDIPF

Nucleotide


Download         Length: 510 bp        

>NTDB_id=450240 FFM53_RS01605 WP_138389200.1 333652..334161(-) (ssb) [Rhizobium indicum strain JKLM 12A2]
ATGGCTGGTAGTGTGAATAAGGTAATTCTGATTGGAAACGTCGGTGCGGACCCCGAAATCCGTCGCACTCAGGATGGCCG
GCCGATCGCCAATCTTCGTATCGCGACCTCGGAGACCTGGCGCGACCGCAATTCCGGCGAGCGCCGTGAGAAGACCGAAT
GGCACACCGTCGTCGTCTTCAACGAGGGCCTCTGCAAGGTCGTCGAACAATATGTGAAGAAGGGCGCCAAGCTCTATATT
GAAGGCCAGCTGCAGACCCGCAAGTGGCAGGACCAGCAGGGCCAGGACCGCTACAGCACGGAAGTGGTGCTGCAGGGTTT
CGGTTCGACGCTGACGATGCTCGACGGTCGCGGTGAAGGCGGGGGTGCGAGCGGCGGCCGTGGCAGTGCCGGTGGCGGCA
ACGATTATGGCGATGACTACGGTGCTCCGGCTCCCGCTTCATCGCCGAGCCGCGGCGGTGGCAGCGGCGGCAACTTCTCG
CGGGATCTCGACGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

50.289

100

0.515
  ssb Glaesserella parasuis strain SC1401

43.979

100

0.497
  ssb Neisseria meningitidis MC58

39.011

100

0.42
  ssb Neisseria gonorrhoeae MS11

38.547

100

0.408