Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HQN79_RS02155 Genome accession   NZ_CP054020
Coordinates   461640..462293 (+) Length   217 a.a.
NCBI ID   WP_173284058.1    Uniprot ID   A0A7D4SHL2
Organism   Thiomicrorhabdus xiamenensis strain G2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 456640..467293
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HQN79_RS02145 (HQN79_02145) - 459216..459938 (-) 723 WP_173284056.1 SIMPL domain-containing protein -
  HQN79_RS02150 (HQN79_02150) - 460225..461652 (+) 1428 WP_173284057.1 MFS transporter -
  HQN79_RS02155 (HQN79_02155) ssb 461640..462293 (+) 654 WP_173284058.1 single-stranded DNA-binding protein Machinery gene
  HQN79_RS02160 (HQN79_02160) - 462607..463158 (+) 552 WP_173284059.1 hypothetical protein -
  HQN79_RS02165 (HQN79_02165) ispB 463225..464190 (-) 966 WP_173284060.1 octaprenyl diphosphate synthase -
  HQN79_RS02170 (HQN79_02170) rplU 464552..464866 (+) 315 WP_173284061.1 50S ribosomal protein L21 -
  HQN79_RS02175 (HQN79_02175) rpmA 464966..465223 (+) 258 WP_173284062.1 50S ribosomal protein L27 -
  HQN79_RS02180 (HQN79_02180) cgtA 465376..466461 (+) 1086 WP_173284063.1 Obg family GTPase CgtA -

Sequence

Protein


Download         Length: 217 a.a.        Molecular weight: 23110.44 Da        Isoelectric Point: 4.9054

>NTDB_id=450227 HQN79_RS02155 WP_173284058.1 461640..462293(+) (ssb) [Thiomicrorhabdus xiamenensis strain G2]
MRGVNKVILVGTLGQDPDVKYAANGNAIANLSVATSEEWNDKQTGQKQQKTEWHRVAIFGKLAEIAGQYLKKGSQVYLEG
KLQTRKWQDQNGQDRYSTEVVISGFDGQMQMLGGRQSDSSFDNGGYGQQNQGGGFGGGAPMGGGMNANQGMGGQQAPQQS
APMGQQPQQNPMGGMNPGMGQNAGQQTPPPMGGNRPMQPQQAPAYAPNDFDDDDVPF

Nucleotide


Download         Length: 654 bp        

>NTDB_id=450227 HQN79_RS02155 WP_173284058.1 461640..462293(+) (ssb) [Thiomicrorhabdus xiamenensis strain G2]
ATGCGAGGCGTAAACAAAGTCATCCTAGTTGGCACCCTTGGCCAAGATCCTGATGTTAAATATGCCGCCAATGGTAACGC
CATTGCAAACTTAAGTGTTGCCACCAGTGAAGAGTGGAATGATAAACAGACTGGCCAGAAGCAGCAGAAAACGGAATGGC
ACCGCGTAGCGATTTTCGGAAAGCTGGCCGAGATTGCCGGACAGTATTTGAAAAAAGGCTCTCAAGTCTATCTTGAGGGG
AAACTGCAGACGCGCAAGTGGCAGGATCAGAACGGTCAGGACCGTTACAGCACCGAAGTGGTTATCAGCGGGTTTGACGG
TCAGATGCAGATGCTGGGCGGACGTCAGTCCGATTCGAGCTTCGATAACGGCGGTTATGGGCAGCAGAATCAAGGTGGCG
GCTTTGGCGGCGGTGCGCCTATGGGCGGCGGTATGAACGCCAATCAAGGCATGGGCGGGCAACAGGCTCCGCAACAGTCG
GCTCCTATGGGACAACAGCCTCAGCAAAACCCGATGGGCGGAATGAATCCGGGAATGGGACAGAACGCCGGTCAACAAAC
ACCGCCTCCAATGGGCGGAAATCGTCCGATGCAGCCGCAGCAGGCTCCTGCTTATGCTCCAAACGATTTTGACGATGACG
ACGTTCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7D4SHL2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

53.211

100

0.535
  ssb Glaesserella parasuis strain SC1401

47.964

100

0.488
  ssb Neisseria meningitidis MC58

41.667

99.539

0.415
  ssb Neisseria gonorrhoeae MS11

41.667

99.539

0.415