Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | FOC62_RS10095 | Genome accession | NZ_CP054017 |
| Coordinates | 2003989..2004504 (+) | Length | 171 a.a. |
| NCBI ID | WP_002451520.1 | Uniprot ID | A0A2T4Q0A0 |
| Organism | Staphylococcus warneri strain FDAARGOS_754 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2002474..2020270 | 2003989..2004504 | within | 0 |
Gene organization within MGE regions
Location: 2002474..2020270
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FOC62_RS10085 (FOC62_10100) | - | 2002474..2003295 (-) | 822 | WP_002451522.1 | GH25 family lysozyme | - |
| FOC62_RS10090 (FOC62_10105) | rpsF | 2003671..2003967 (+) | 297 | WP_002451521.1 | 30S ribosomal protein S6 | - |
| FOC62_RS10095 (FOC62_10110) | ssbA | 2003989..2004504 (+) | 516 | WP_002451520.1 | single-stranded DNA-binding protein | Machinery gene |
| FOC62_RS10100 (FOC62_10115) | rpsR | 2004547..2004789 (+) | 243 | WP_002451519.1 | 30S ribosomal protein S18 | - |
| FOC62_RS10105 (FOC62_10120) | - | 2005016..2006239 (-) | 1224 | WP_002451518.1 | site-specific integrase | - |
| FOC62_RS10110 (FOC62_10125) | - | 2006263..2007024 (-) | 762 | WP_002451517.1 | helix-turn-helix transcriptional regulator | - |
| FOC62_RS10115 (FOC62_10130) | - | 2007229..2007393 (+) | 165 | WP_002451516.1 | helix-turn-helix domain-containing protein | - |
| FOC62_RS10120 (FOC62_10135) | - | 2007394..2007666 (+) | 273 | WP_002451515.1 | hypothetical protein | - |
| FOC62_RS10125 (FOC62_10140) | - | 2007679..2007834 (+) | 156 | WP_002451514.1 | hypothetical protein | - |
| FOC62_RS10130 (FOC62_10145) | - | 2007836..2008048 (+) | 213 | WP_002451513.1 | hypothetical protein | - |
| FOC62_RS10135 (FOC62_10150) | - | 2008050..2008409 (+) | 360 | Protein_1932 | pathogenicity island protein | - |
| FOC62_RS10140 (FOC62_10155) | - | 2008411..2008749 (+) | 339 | WP_002451510.1 | hypothetical protein | - |
| FOC62_RS10145 (FOC62_10160) | - | 2008838..2009710 (+) | 873 | WP_002451509.1 | primase alpha helix C-terminal domain-containing protein | - |
| FOC62_RS10150 (FOC62_10165) | - | 2009725..2011434 (+) | 1710 | WP_002451508.1 | DUF927 domain-containing protein | - |
| FOC62_RS10155 (FOC62_10170) | - | 2011764..2012141 (+) | 378 | WP_002451507.1 | hypothetical protein | - |
| FOC62_RS10160 (FOC62_10175) | - | 2012143..2012784 (+) | 642 | WP_002451506.1 | hypothetical protein | - |
| FOC62_RS10165 (FOC62_10180) | - | 2013065..2013409 (+) | 345 | WP_002451505.1 | hypothetical protein | - |
| FOC62_RS10170 (FOC62_10185) | - | 2013423..2014226 (+) | 804 | WP_002451504.1 | hypothetical protein | - |
| FOC62_RS10175 (FOC62_10190) | - | 2014199..2014432 (+) | 234 | WP_002451503.1 | hypothetical protein | - |
| FOC62_RS10180 (FOC62_10195) | - | 2014444..2014965 (+) | 522 | WP_002451502.1 | hypothetical protein | - |
| FOC62_RS10185 (FOC62_10200) | - | 2015027..2015506 (+) | 480 | WP_002451501.1 | terminase small subunit | - |
| FOC62_RS10190 (FOC62_10205) | - | 2016195..2016470 (+) | 276 | WP_052831765.1 | hypothetical protein | - |
| FOC62_RS10195 (FOC62_10210) | - | 2018973..2019206 (+) | 234 | WP_002451499.1 | hypothetical protein | - |
| FOC62_RS10200 (FOC62_10215) | - | 2019765..2020019 (+) | 255 | WP_002451497.1 | GlsB/YeaQ/YmgE family stress response membrane protein | - |
| FOC62_RS10205 (FOC62_10220) | - | 2020094..2020270 (-) | 177 | WP_002451496.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 171 a.a. Molecular weight: 18884.43 Da Isoelectric Point: 4.7410
>NTDB_id=450208 FOC62_RS10095 WP_002451520.1 2003989..2004504(+) (ssbA) [Staphylococcus warneri strain FDAARGOS_754]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQAENVNNYLSKGSLAGVDGRIQSR
SYENQEGRRIFVTEVVCDSVQFLEPKNSQNGGGQRSQNNEFQDYGQGFGGQQSGQNTSYNNNSSRPNSNQSDNPFANANG
PIDISDDDLPF
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQAENVNNYLSKGSLAGVDGRIQSR
SYENQEGRRIFVTEVVCDSVQFLEPKNSQNGGGQRSQNNEFQDYGQGFGGQQSGQNTSYNNNSSRPNSNQSDNPFANANG
PIDISDDDLPF
Nucleotide
Download Length: 516 bp
>NTDB_id=450208 FOC62_RS10095 WP_002451520.1 2003989..2004504(+) (ssbA) [Staphylococcus warneri strain FDAARGOS_754]
ATGTTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCAGAATACAGAACCACTCCCTCAGGCGTAAGTGTAGC
GACATTTACTCTAGCAGTTAATCGTACTTTCACGAATGCTCAAGGGGAACGCGAAGCAGATTTCATTAACTGTGTTGTTT
TTAGAAGACAAGCAGAAAATGTAAATAACTACTTATCTAAAGGTAGTTTAGCTGGCGTTGATGGTCGCATACAGTCACGT
AGTTATGAAAATCAAGAAGGTCGTCGTATCTTTGTTACTGAAGTCGTTTGTGACAGTGTTCAATTCCTTGAACCTAAGAA
TTCACAAAATGGCGGTGGCCAACGTTCACAAAACAACGAATTCCAAGACTATGGTCAAGGATTCGGTGGCCAACAATCAG
GACAAAATACTTCGTATAACAACAATTCATCAAGACCTAATTCAAATCAATCAGATAATCCATTTGCGAACGCGAACGGA
CCTATTGATATTAGTGATGATGATTTACCATTCTAA
ATGTTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCAGAATACAGAACCACTCCCTCAGGCGTAAGTGTAGC
GACATTTACTCTAGCAGTTAATCGTACTTTCACGAATGCTCAAGGGGAACGCGAAGCAGATTTCATTAACTGTGTTGTTT
TTAGAAGACAAGCAGAAAATGTAAATAACTACTTATCTAAAGGTAGTTTAGCTGGCGTTGATGGTCGCATACAGTCACGT
AGTTATGAAAATCAAGAAGGTCGTCGTATCTTTGTTACTGAAGTCGTTTGTGACAGTGTTCAATTCCTTGAACCTAAGAA
TTCACAAAATGGCGGTGGCCAACGTTCACAAAACAACGAATTCCAAGACTATGGTCAAGGATTCGGTGGCCAACAATCAG
GACAAAATACTTCGTATAACAACAATTCATCAAGACCTAATTCAAATCAATCAGATAATCCATTTGCGAACGCGAACGGA
CCTATTGATATTAGTGATGATGATTTACCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
61.453 |
100 |
0.643 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
52.601 |
100 |
0.532 |
| ssb | Glaesserella parasuis strain SC1401 |
36.872 |
100 |
0.386 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
60.377 |
61.988 |
0.374 |