Detailed information    

insolico Bioinformatically predicted

Overview

Name   comD/comD3   Type   Regulator
Locus tag   FOC63_RS02705 Genome accession   NZ_CP054015
Coordinates   553150..554514 (-) Length   454 a.a.
NCBI ID   WP_009854992.1    Uniprot ID   -
Organism   Streptococcus gallolyticus strain FDAARGOS_755     
Function   phosphorylation of ComE (predicted from homology)   
Competence regulation

Genomic Context

Location: 548150..559514
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC63_RS02675 (FOC63_02675) - 548460..549089 (-) 630 WP_009854988.1 thiamine diphosphokinase -
  FOC63_RS02680 (FOC63_02680) rpe 549082..549744 (-) 663 WP_009854989.1 ribulose-phosphate 3-epimerase -
  FOC63_RS02685 (FOC63_02685) rsgA 549751..550623 (-) 873 WP_009854990.1 ribosome small subunit-dependent GTPase A -
  FOC63_RS02700 (FOC63_02700) - 552818..553018 (-) 201 WP_009854991.1 hypothetical protein -
  FOC63_RS02705 (FOC63_02705) comD/comD3 553150..554514 (-) 1365 WP_009854992.1 sensor histidine kinase Regulator
  FOC63_RS02710 (FOC63_02710) comE/comE2 554527..555255 (-) 729 WP_012962512.1 LytR/AlgR family response regulator transcription factor Regulator
  FOC63_RS02715 (FOC63_02715) - 555354..555647 (-) 294 WP_009854994.1 bacteriocin immunity protein -
  FOC63_RS02720 (FOC63_02720) - 555698..555925 (-) 228 WP_009854995.1 hypothetical protein -
  FOC63_RS02725 (FOC63_02725) - 556195..556506 (-) 312 WP_003066564.1 bacteriocin immunity protein -
  FOC63_RS02730 (FOC63_02730) - 556518..556667 (-) 150 WP_009854997.1 hypothetical protein -
  FOC63_RS02735 (FOC63_02735) - 556677..556976 (-) 300 WP_009854998.1 DUF3884 family protein -
  FOC63_RS02740 (FOC63_02740) - 557276..557413 (+) 138 WP_009854999.1 hypothetical protein -
  FOC63_RS02745 (FOC63_02745) - 557435..558742 (-) 1308 WP_009855000.1 sensor histidine kinase -
  FOC63_RS02750 (FOC63_02750) comE/comE1 558750..559481 (-) 732 WP_009855001.1 response regulator transcription factor Regulator

Sequence

Protein


Download         Length: 454 a.a.        Molecular weight: 52378.70 Da        Isoelectric Point: 5.1864

>NTDB_id=450126 FOC63_RS02705 WP_009854992.1 553150..554514(-) (comD/comD3) [Streptococcus gallolyticus strain FDAARGOS_755]
MDLRSLIAFLETFVTFLGYAILFKSITKYRLAVWEWLVSVLVLPILASGFAVVMLLCFADMDGFKTVMIKNIVVLLWFTT
LSYRHDRSLLPRYHIFYGLFPVAVEDILLRTVSYSLAALFSTRINAIGQSWIAHVDIWTPVPIYFMASKLLEIDISNVKK
TLQNYLSSTSLILINLLMAFYFFGIDYVALKSPFGSVGSESFRERVTFVYFILLFLFLFYLNYKYVREQEIELQRQQELE
LISLENYSKHVESLYQEVRSFRHDYANILLSIGESIERNDLETIKKIYNDITNDSEKLVRNSKFDLTRLSHISNSAIKSL
MSAKFLEAENLGITITLEVPEVVECPKIPLITYIRILAILFDNAIEAAVLSDVPKISVANFYQDDNFVFMIENSTKEDSI
PIDNIYQKGYSSKGDNRGIGLATVSEFQQEYDNLSIETSSSNHLFRQILRIYES

Nucleotide


Download         Length: 1365 bp        

>NTDB_id=450126 FOC63_RS02705 WP_009854992.1 553150..554514(-) (comD/comD3) [Streptococcus gallolyticus strain FDAARGOS_755]
TTGGATTTAAGGAGTTTAATTGCGTTTTTAGAAACCTTTGTCACGTTTTTGGGGTATGCTATCCTATTTAAGAGCATTAC
CAAGTACCGACTTGCCGTTTGGGAATGGCTAGTATCTGTTTTAGTGTTGCCAATTCTTGCATCAGGCTTTGCGGTTGTCA
TGCTTTTATGCTTTGCGGATATGGACGGTTTCAAAACTGTCATGATTAAAAATATTGTGGTGTTGTTGTGGTTTACCACC
TTATCTTACCGTCATGATAGGTCCTTGCTACCAAGGTATCATATTTTTTATGGGCTTTTCCCAGTTGCGGTAGAGGATAT
TTTGCTTAGGACGGTGTCTTATTCATTAGCGGCGCTATTTTCCACAAGAATCAATGCTATCGGACAGTCATGGATTGCTC
ATGTTGACATCTGGACACCCGTTCCGATTTATTTTATGGCTTCAAAATTACTGGAAATTGATATTTCAAATGTCAAAAAG
ACCTTGCAAAATTACCTTAGCTCGACAAGTCTTATCTTGATTAATCTGCTAATGGCTTTCTATTTTTTTGGAATAGATTA
TGTCGCTTTGAAAAGTCCATTTGGTAGCGTAGGTAGCGAATCGTTTAGAGAAAGAGTTACTTTTGTTTACTTTATTCTTC
TTTTTCTATTTTTGTTCTATCTGAATTACAAATACGTCCGTGAACAAGAGATAGAATTACAAAGGCAGCAGGAGCTAGAA
TTAATTTCGCTGGAAAATTACAGCAAACATGTGGAAAGTTTGTACCAAGAGGTTAGAAGTTTCAGGCATGACTATGCCAA
TATTTTGTTGAGTATAGGAGAAAGTATCGAGCGAAATGACTTGGAAACTATCAAAAAAATCTACAATGACATTACTAATG
ATTCTGAGAAGCTCGTCAGAAATAGCAAATTCGATTTGACACGCTTGTCTCATATTTCAAATAGTGCCATCAAAAGTTTG
ATGTCTGCTAAATTTCTAGAGGCTGAAAATCTCGGAATCACCATTACTTTGGAAGTTCCTGAAGTCGTGGAGTGTCCCAA
AATTCCACTTATTACCTACATTCGCATCCTTGCTATCTTGTTTGATAATGCGATTGAAGCTGCGGTGTTATCAGATGTTC
CTAAAATATCCGTAGCGAATTTTTATCAAGATGATAACTTTGTTTTTATGATTGAAAATTCAACCAAAGAAGATAGTATT
CCGATTGATAATATTTATCAAAAAGGCTATTCAAGCAAAGGAGACAATCGTGGTATTGGCTTAGCAACAGTTAGTGAATT
TCAGCAAGAATATGACAATCTCTCCATTGAAACAAGCAGCTCAAATCACCTCTTTAGACAAATTTTGAGAATCTATGAAT
CCTAG

Domains

Predicted by InterproScan.

GHKL domain (HATPase_c_5)

(354-449)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comD/comD3 Streptococcus equinus JB1

50.328

100

0.507
  comD/comD2 Streptococcus equinus JB1

57.372

68.722

0.394