Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   FOC68_RS10100 Genome accession   NZ_CP054006
Coordinates   1999727..2000242 (+) Length   171 a.a.
NCBI ID   WP_002447969.1    Uniprot ID   A0A8I1BDZ2
Organism   Staphylococcus hominis strain FDAARGOS_762     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1994727..2005242
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC68_RS10070 (FOC68_10095) - 1995735..1996559 (+) 825 WP_002448017.1 ParB/RepB/Spo0J family partition protein -
  FOC68_RS10075 (FOC68_10100) - 1996690..1997568 (+) 879 WP_002448012.1 mechanosensitive ion channel family protein -
  FOC68_RS10080 (FOC68_10105) - 1997589..1997792 (+) 204 WP_002448008.1 DUF951 domain-containing protein -
  FOC68_RS10085 (FOC68_10110) ychF 1997804..1998901 (+) 1098 WP_002447976.1 redox-regulated ATPase YchF -
  FOC68_RS10090 (FOC68_10115) - 1998970..1999161 (-) 192 WP_002447995.1 hypothetical protein -
  FOC68_RS10095 (FOC68_10120) rpsF 1999409..1999705 (+) 297 WP_002447961.1 30S ribosomal protein S6 -
  FOC68_RS10100 (FOC68_10125) ssbA 1999727..2000242 (+) 516 WP_002447969.1 single-stranded DNA-binding protein Machinery gene
  FOC68_RS10105 (FOC68_10130) rpsR 2000284..2000526 (+) 243 WP_002447994.1 30S ribosomal protein S18 -
  FOC68_RS10110 (FOC68_10135) - 2000710..2001636 (+) 927 WP_002447998.1 hypothetical protein -
  FOC68_RS10115 (FOC68_10140) - 2001917..2002165 (+) 249 WP_002447983.1 GlsB/YeaQ/YmgE family stress response membrane protein -
  FOC68_RS10120 (FOC68_10145) - 2002444..2003022 (+) 579 WP_002447942.1 histidine phosphatase family protein -
  FOC68_RS10125 (FOC68_10150) - 2003120..2003749 (-) 630 WP_002447997.1 NDxxF motif lipoprotein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18841.33 Da        Isoelectric Point: 4.9265

>NTDB_id=450089 FOC68_RS10100 WP_002447969.1 1999727..2000242(+) (ssbA) [Staphylococcus hominis strain FDAARGOS_762]
MINRVVLVGRLTKDPEYRSTPSGVSVATFTLAVNRTFTNAQGEREADFINVVVFRRQAENVNNYLSKGSLAGVDGRIQSR
SYENQEGRRIFVTEVVADSVQFLEPKNAQGGQRHQGNNDFQDYGQGFGGSQSGQNTSYNNNNNRASNNNQSDNPFANANG
PIDISDDDLPF

Nucleotide


Download         Length: 516 bp        

>NTDB_id=450089 FOC68_RS10100 WP_002447969.1 1999727..2000242(+) (ssbA) [Staphylococcus hominis strain FDAARGOS_762]
ATGATAAATCGAGTTGTATTAGTAGGTCGTTTAACTAAGGATCCAGAATACAGAAGTACTCCCTCAGGCGTAAGTGTAGC
GACATTTACTCTAGCAGTTAACCGTACTTTCACGAATGCTCAAGGGGAACGCGAAGCTGACTTTATTAACGTTGTTGTAT
TTAGAAGACAAGCAGAAAACGTAAATAACTATCTTTCAAAAGGTAGTTTAGCTGGCGTTGATGGTCGCATACAATCACGT
AGTTATGAAAATCAAGAAGGTCGTCGTATATTTGTCACTGAAGTTGTAGCGGATAGTGTTCAATTCCTTGAACCTAAAAA
TGCACAAGGTGGACAACGTCATCAAGGAAATAATGATTTCCAAGATTATGGCCAAGGGTTTGGTGGTTCACAATCAGGAC
AAAATACATCTTATAATAATAATAACAATCGTGCATCAAACAATAATCAATCAGATAACCCATTTGCAAATGCAAATGGT
CCAATTGATATTAGTGATGATGACTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

61.111

100

0.643
  ssb Latilactobacillus sakei subsp. sakei 23K

54.913

100

0.556
  ssb Glaesserella parasuis strain SC1401

34.043

100

0.374
  ssbB Bacillus subtilis subsp. subtilis str. 168

60.377

61.988

0.374