Detailed information NTG0449723

Bioinformatically predicted

Overview

• Name: recF
• Type: Machinery gene
• Locus tag: ST4147_RS09340
• Genome accession: NZ_CP065504
• Coordinates: 1783709..1784809 (+)
• Length: 366 a.a.
• NCBI ID: WP_002947786.1
• Uniprot ID: Q5LXI7
• Organism: Streptococcus thermophilus strain 4147
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1778709..1789809

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ST4147_RS09315 (ST4147_09325)	pgsA	1779250..1779792 (-)	543	WP_011227624.1	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	-
ST4147_RS09320 (ST4147_09330)	-	1779805..1780662 (-)	858	WP_011226703.1	helix-turn-helix domain-containing protein	-
ST4147_RS09325 (ST4147_09335)	-	1780721..1781999 (-)	1279	Protein_1778	pitrilysin family protein	-
ST4147_RS09330 (ST4147_09340)	-	1782001..1783251 (-)	1251	WP_011681762.1	pitrilysin family protein	-
ST4147_RS09335 (ST4147_09345)	yaaA	1783329..1783706 (+)	378	WP_002947785.1	S4 domain-containing protein YaaA	-
ST4147_RS09340 (ST4147_09350)	recF	1783709..1784809 (+)	1101	WP_002947786.1	DNA replication/repair protein RecF	Machinery gene
ST4147_RS09345 (ST4147_09355)	guaB	1784978..1786459 (-)	1482	WP_011227627.1	IMP dehydrogenase	-
ST4147_RS09350 (ST4147_09360)	trpS	1786636..1787658 (-)	1023	WP_002952292.1	tryptophan--tRNA ligase	-
ST4147_RS09355 (ST4147_09365)	-	1788086..1788958 (+)	873	WP_011227628.1	YitT family protein	-

Sequence

Protein

• Length: 366 a.a.
• Molecular weight: 42173.29 Da
• Isoelectric Point: 8.3913

>NTDB_id=449723 ST4147_RS09340 WP_002947786.1 1783709..1784809(+) (recF) [Streptococcus thermophilus strain 4147]
MWLEKIDIQHFRNYSEASVSFSPHLNIFLGRNAQGKTNILEAIYFLALTRSHRTHLDKELIQFQQNSLKLNGIVHRHSGN
LPLEINLSNKGRVTKVNYLKQAKLSDYIGHMTVVLFAPEDLQLVKGSPSLRRKFIDIDLGQIKPVYLSDLSNYNHVLKQR
NAYLKSTDKVDINFLSVLDEQLADFGARVIKHRLEFIKQLEEEADGHHSILSNQIERLKISYESNIPIQNSKDIREAFLT
TLNQNHKRDIFKKNTGVGPHRDDLKFYINDMNASFGSQGQQRSLILSLKMAEIALIKKVTEEFPILLLDDVMSELDNHRQ
LKLLESIDEEVQTFMTTTSLDHLSNLPPNLKTFLVKNGTIYEKQVD

Nucleotide

• Length: 1101 bp

>NTDB_id=449723 ST4147_RS09340 WP_002947786.1 1783709..1784809(+) (recF) [Streptococcus thermophilus strain 4147]
ATGTGGCTTGAAAAAATTGATATTCAACACTTTAGAAATTATTCTGAAGCCTCTGTGAGCTTTTCACCACATCTCAATAT
TTTTCTTGGACGAAATGCCCAAGGAAAAACAAATATTCTTGAAGCTATCTATTTTCTAGCCTTAACACGTAGTCATCGGA
CCCATTTAGACAAGGAACTAATTCAGTTCCAGCAAAATAGTCTTAAACTAAACGGCATCGTGCACCGTCATAGTGGAAAC
CTACCTCTGGAAATCAACTTATCTAATAAGGGACGAGTTACAAAGGTCAACTACCTCAAGCAGGCAAAATTATCTGATTA
TATAGGTCACATGACGGTGGTACTCTTTGCTCCTGAGGATTTACAACTTGTAAAAGGATCTCCAAGTCTAAGACGTAAAT
TTATAGATATTGATTTAGGACAGATTAAGCCTGTTTACCTCTCAGACCTATCAAATTACAATCATGTTCTTAAGCAGCGT
AATGCCTATCTCAAATCTACTGACAAGGTAGACATTAATTTCCTCTCAGTTTTAGATGAACAGCTTGCCGATTTTGGAGC
ACGAGTTATTAAACATAGACTAGAATTTATCAAGCAATTAGAAGAGGAAGCTGATGGACATCATAGTATTCTCTCAAATC
AGATTGAGCGTCTTAAAATTTCCTATGAATCTAACATCCCAATACAAAATAGCAAAGATATTCGAGAAGCATTTTTAACT
ACATTAAACCAGAATCACAAAAGAGATATCTTCAAAAAGAATACCGGTGTTGGTCCACATAGGGATGATTTAAAATTTTA
CATTAATGACATGAACGCATCTTTCGGTAGTCAAGGGCAGCAACGTAGCCTTATTCTTTCATTAAAAATGGCTGAGATTG
CTCTAATTAAAAAAGTGACGGAGGAATTTCCTATTCTTCTCCTTGACGATGTCATGAGTGAACTTGACAATCACCGTCAA
CTTAAATTGCTAGAAAGTATTGATGAAGAGGTCCAAACTTTCATGACTACAACCTCACTCGATCATCTTAGCAACCTACC
ACCCAATTTAAAGACCTTCTTAGTTAAGAATGGTACTATTTATGAAAAGCAAGTCGATTAA

Domains

Predicted by InterProScan.

• RecF/RecN/SMC N terminal domain (SMC_N) (3-358)

3D structure

• AlphaFold DB: Q5LXI7

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recF	Streptococcus pneumoniae R6	65.642	97.814	0.642
recF	Bacillus subtilis subsp. subtilis str. 168	42.935	100	0.432