Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   FOC84_RS13540 Genome accession   NZ_CP053985
Coordinates   2788197..2788718 (+) Length   173 a.a.
NCBI ID   WP_173144840.1    Uniprot ID   -
Organism   Achromobacter pestifer strain FDAARGOS_790     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2783197..2793718
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC84_RS13530 (FOC84_13530) uvrA 2783660..2786521 (-) 2862 WP_173144838.1 excinuclease ABC subunit UvrA -
  FOC84_RS13535 (FOC84_13535) - 2786702..2787919 (+) 1218 WP_173144839.1 MFS transporter -
  FOC84_RS13540 (FOC84_13540) ssb 2788197..2788718 (+) 522 WP_173144840.1 single-stranded DNA-binding protein Machinery gene
  FOC84_RS13545 (FOC84_13545) - 2789080..2789385 (+) 306 WP_173144841.1 DUF4148 domain-containing protein -
  FOC84_RS13550 (FOC84_13550) - 2789469..2789774 (+) 306 WP_173144842.1 DUF4148 domain-containing protein -
  FOC84_RS13555 (FOC84_13555) - 2789905..2790501 (+) 597 WP_173144843.1 TetR/AcrR family transcriptional regulator -
  FOC84_RS13560 (FOC84_13560) - 2790582..2791442 (-) 861 WP_173144844.1 cysteine hydrolase -
  FOC84_RS13565 (FOC84_13565) - 2791692..2792309 (-) 618 WP_173144845.1 TetR/AcrR family transcriptional regulator -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 18642.70 Da        Isoelectric Point: 5.9702

>NTDB_id=449700 FOC84_RS13540 WP_173144840.1 2788197..2788718(+) (ssb) [Achromobacter pestifer strain FDAARGOS_790]
MASVNKVILVGNLGRDPEVRYSPEGAAICNMSIATTSTWKDKASGERREETEWHRVVMYNRLAEIAGEYLKKGRSVYIEG
RLKTRKWQDKDTGADRYSTEVVADQMQMLGGREDGGGGGASFGGGGGYDDAPSRPPQQRAPAQRPAPQQRPAPAAAPASS
GANLADMDDDIPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=449700 FOC84_RS13540 WP_173144840.1 2788197..2788718(+) (ssb) [Achromobacter pestifer strain FDAARGOS_790]
ATGGCATCGGTTAACAAAGTCATACTCGTGGGCAATCTGGGGCGCGACCCGGAAGTCCGCTACAGCCCCGAAGGGGCGGC
AATCTGCAATATGTCCATTGCCACCACCTCCACCTGGAAAGACAAGGCTTCGGGCGAACGCCGCGAAGAAACGGAATGGC
ACCGCGTCGTCATGTACAACCGCCTGGCTGAAATCGCCGGCGAATACCTGAAGAAGGGCCGCTCGGTCTACATCGAAGGC
CGCCTGAAGACGCGCAAGTGGCAAGACAAGGACACCGGCGCCGACCGCTACAGCACCGAAGTCGTCGCCGACCAGATGCA
GATGCTGGGCGGCCGCGAAGACGGCGGTGGCGGTGGCGCAAGCTTTGGCGGCGGTGGCGGCTACGACGACGCGCCCTCGC
GTCCGCCGCAGCAACGCGCCCCGGCCCAACGCCCGGCCCCGCAGCAGCGCCCGGCTCCCGCGGCGGCTCCGGCCAGCAGC
GGCGCTAATTTGGCGGACATGGACGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

55.191

100

0.584
  ssb Neisseria meningitidis MC58

52.486

100

0.549
  ssb Neisseria gonorrhoeae MS11

52.571

100

0.532
  ssb Glaesserella parasuis strain SC1401

48.925

100

0.526