Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   STT55_RS07015 Genome accession   NZ_CP065502
Coordinates   1345551..1347518 (-) Length   655 a.a.
NCBI ID   WP_347229913.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain ST55     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1340551..1352518
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STT55_RS06995 (STT55_06945) - 1341053..1341982 (-) 930 WP_002951426.1 ATP-binding cassette domain-containing protein -
  STT55_RS07000 (STT55_06950) amiE 1341975..1343060 (-) 1086 WP_011226304.1 ABC transporter ATP-binding protein Regulator
  STT55_RS07005 (STT55_06955) amiD 1343070..1343996 (-) 927 WP_002946409.1 oligopeptide ABC transporter permease OppC Regulator
  STT55_RS07010 (STT55_06960) amiC 1343996..1345489 (-) 1494 WP_002946410.1 ABC transporter permease Regulator
  STT55_RS07015 (STT55_06965) amiA 1345551..1347518 (-) 1968 WP_347229913.1 peptide ABC transporter substrate-binding protein Regulator
  STT55_RS07020 (STT55_06970) - 1347722..1347912 (-) 191 Protein_1329 IS3 family transposase -
  STT55_RS07025 (STT55_06975) - 1347903..1348073 (-) 171 WP_014608546.1 hypothetical protein -
  STT55_RS07030 (STT55_06980) - 1348086..1348322 (-) 237 WP_308123564.1 ABC transporter ATP-binding protein -
  STT55_RS07035 (STT55_06985) - 1348302..1348662 (-) 361 Protein_1332 TatD family hydrolase -
  STT55_RS07040 (STT55_06990) - 1349011..1350216 (+) 1206 WP_011227415.1 OFA family MFS transporter -
  STT55_RS07045 (STT55_06995) - 1350263..1351615 (-) 1353 Protein_1334 IS3 family transposase -

Sequence

Protein


Download         Length: 655 a.a.        Molecular weight: 71618.56 Da        Isoelectric Point: 4.9770

>NTDB_id=449583 STT55_RS07015 WP_347229913.1 1345551..1347518(-) (amiA) [Streptococcus thermophilus strain ST55]
MKKSKWLALAGVALLGVGVLAACSSKSSTSGTTYSNIYGSDPETLDYITSIMGGTKAVLTNGVDGLMEADKYGNLVPSVA
EDWSVSKDGLTYTYKIRKGIKWYTSEGEEYANVTAKDFVTGLKHAADAKSGALYLVQDSIAGLSDYLSGANKDFSNVGVK
AIDDYTLQYTLKKQEPYWNSKTTYGVLFPVNEDFLKNKGKDFGKSTDPTSILYNGPFLLKSLTAKSSIELTKNENYWDKK
NVHFDSIKFSYSDGSDLESIERSFSDGALSIARVFPTSSNYASVEKKYKDNIFYTEPGASTSVIGVNIDRQSYKFSAKKT
DAEKTSTKKALLNKDFRQSINFAIDRTAYQSQVNGKDGAALALRNLFVPYDFVSAGDKTFGDLVTEKMSSYGDEWSGVNF
ADGQDGLYNAEKAKTEFAKAKEALQGEGVQFPVHLDLPVDQSSKLSVAQAQSLKQTIEKSLSSENVVIDINQMSSDDMNN
VTSNAANAAAEDWDISNGVGWGPDYQDPSTYLDILKTTSSETTKAFNGYDDPNNAAAAQVGLKDYDALLDSAASETTDIN
ARYDRYAQAQAWLEDSSLIIPLTVSNGAAPVISRLTPFTGASIQVGDKGSSYVKYVKSQEKVVTKKEYEQSREKWLKEKK
ASNENAQKDLEKHVK

Nucleotide


Download         Length: 1968 bp        

>NTDB_id=449583 STT55_RS07015 WP_347229913.1 1345551..1347518(-) (amiA) [Streptococcus thermophilus strain ST55]
ATGAAAAAAAGCAAATGGTTGGCCCTCGCGGGTGTAGCACTTCTAGGTGTTGGTGTGTTAGCGGCTTGTTCTTCTAAATC
AAGTACTAGTGGAACGACTTATAGTAATATTTATGGCTCAGATCCAGAAACCTTGGATTATATTACATCAATTATGGGAG
GGACAAAAGCTGTTTTGACTAATGGTGTAGATGGTCTTATGGAAGCGGACAAATATGGTAATCTTGTTCCATCAGTAGCT
GAAGACTGGTCTGTGTCTAAAGATGGTCTGACTTATACCTATAAAATTCGTAAAGGGATCAAATGGTATACTTCTGAAGG
TGAAGAGTACGCTAATGTTACTGCTAAGGACTTTGTAACGGGTCTTAAGCATGCCGCTGATGCCAAATCTGGAGCCCTTT
ATTTGGTACAAGATTCTATTGCTGGATTGTCTGACTACCTTTCTGGTGCCAATAAAGATTTCTCAAATGTTGGCGTTAAA
GCAATCGACGATTACACTCTGCAATACACACTAAAAAAACAGGAACCATACTGGAACTCTAAGACAACCTATGGTGTGCT
CTTCCCAGTTAACGAAGACTTTCTTAAGAACAAAGGGAAAGATTTTGGTAAGTCAACAGACCCAACCTCTATCCTATATA
ACGGTCCTTTCCTTCTTAAATCTTTGACAGCTAAATCATCTATCGAGTTGACTAAGAATGAGAATTATTGGGATAAGAAA
AACGTGCATTTTGACTCTATCAAATTCTCATATTCTGATGGATCGGATCTAGAATCAATAGAACGTAGTTTCTCTGACGG
CGCTCTCAGCATTGCACGTGTCTTCCCTACGAGTTCAAACTATGCATCGGTAGAAAAAAAATATAAAGATAATATTTTTT
ACACAGAACCAGGTGCATCTACATCGGTTATTGGTGTAAACATTGACCGCCAAAGCTATAAATTCTCAGCTAAGAAGACA
GATGCTGAAAAGACATCAACTAAGAAGGCTCTTCTAAACAAAGACTTTCGTCAATCAATCAACTTCGCTATTGATCGTAC
AGCCTATCAATCACAAGTAAACGGTAAAGATGGCGCAGCTCTTGCTCTACGTAACCTTTTTGTTCCTTATGATTTTGTCA
GTGCAGGTGATAAGACCTTTGGTGATCTTGTGACAGAAAAAATGAGCTCTTATGGTGATGAGTGGTCTGGTGTTAACTTT
GCAGATGGTCAAGACGGTCTCTATAATGCTGAAAAAGCTAAGACTGAGTTTGCCAAAGCCAAAGAGGCTCTTCAAGGAGA
AGGGGTACAATTCCCAGTTCACTTAGACCTTCCAGTTGATCAAAGTTCTAAACTTAGTGTTGCTCAAGCTCAATCTTTGA
AACAAACCATTGAAAAATCATTGAGTAGCGAAAATGTTGTTATAGATATTAACCAAATGTCATCTGATGACATGAATAAT
GTGACTAGTAATGCGGCAAATGCTGCAGCAGAAGACTGGGATATTTCTAACGGTGTGGGTTGGGGTCCAGATTATCAAGA
TCCATCAACTTATCTTGATATCTTAAAAACAACATCAAGTGAAACTACCAAGGCTTTCAATGGTTATGATGATCCAAACA
ATGCAGCAGCAGCCCAAGTAGGTCTTAAGGATTATGATGCCTTGCTTGATTCAGCAGCTTCAGAAACAACAGACATCAAC
GCTCGTTACGACCGTTATGCTCAAGCCCAAGCTTGGTTGGAAGATAGCTCTCTTATCATTCCATTGACTGTTAGTAACGG
TGCAGCACCAGTTATCTCACGTTTGACACCATTTACGGGTGCTAGCATACAGGTGGGTGATAAGGGCTCATCCTACGTCA
AATATGTGAAATCACAAGAAAAAGTAGTTACTAAGAAAGAATATGAACAAAGTCGTGAAAAATGGCTTAAAGAAAAGAAA
GCATCTAACGAAAATGCTCAAAAAGATCTTGAGAAACACGTTAAATAA

Domains

Predicted by InterProScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(75-519)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

89.482

100

0.896
  amiA3 Streptococcus thermophilus LMG 18311

87.671

100

0.879
  amiA3 Streptococcus thermophilus LMD-9

87.671

100

0.879