Detailed information    

insolico Bioinformatically predicted

Overview

Name   cclA/cilC   Type   Machinery gene
Locus tag   STAVA116_RS03580 Genome accession   NZ_CP065498
Coordinates   675500..676147 (-) Length   215 a.a.
NCBI ID   WP_022096799.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain AVA116     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 670500..681147
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STAVA116_RS03565 (STAVA116_03530) holA 672250..673284 (+) 1035 WP_002946639.1 DNA polymerase III subunit delta -
  STAVA116_RS03570 (STAVA116_03535) sodA 673379..673984 (+) 606 WP_011680996.1 superoxide dismutase SodA -
  STAVA116_RS03575 (STAVA116_03540) - 674081..675460 (+) 1380 WP_087009823.1 serine hydrolase -
  STAVA116_RS03580 (STAVA116_03545) cclA/cilC 675500..676147 (-) 648 WP_022096799.1 A24 family peptidase Machinery gene
  STAVA116_RS03585 (STAVA116_03550) - 676256..676777 (+) 522 WP_011225768.1 Dps family protein -
  STAVA116_RS03590 (STAVA116_03555) - 676866..677303 (+) 438 WP_347229885.1 Fur family transcriptional regulator -
  STAVA116_RS03595 (STAVA116_03560) - 677414..677620 (+) 207 WP_002950395.1 YqgQ family protein -
  STAVA116_RS03600 (STAVA116_03565) - 677613..678581 (+) 969 WP_082308904.1 ROK family glucokinase -
  STAVA116_RS03605 (STAVA116_03570) typA 678719..680566 (+) 1848 WP_011227074.1 translational GTPase TypA -
  STAVA116_RS03610 (STAVA116_03575) - 680590..680862 (+) 273 WP_002950398.1 DUF3165 family protein -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 24867.95 Da        Isoelectric Point: 8.2133

>NTDB_id=449347 STAVA116_RS03580 WP_022096799.1 675500..676147(-) (cclA/cilC) [Streptococcus thermophilus strain AVA116]
MLSILYFFLGTSLGSFIGLICDRFPEKSIIFPRSHCNQCGHPLHFFEMIPILSQLFLRFKCRLCQSSIPYRYLFLELFCG
GILLLYFYDYLDFGRTYLLFFSLCLTIFDLKNKSYPLLIWILGTLPLLCLGNHYLTFSLGISLAVLSYIKRLNIGEGDFL
YLASVSLIFPFSKILIAIELACSFGLMYFLVRKNPNETVAFVPFLFMSVLILTFM

Nucleotide


Download         Length: 648 bp        

>NTDB_id=449347 STAVA116_RS03580 WP_022096799.1 675500..676147(-) (cclA/cilC) [Streptococcus thermophilus strain AVA116]
ATGCTTAGTATTTTATATTTTTTTCTTGGTACCTCTTTAGGCTCGTTTATTGGATTGATTTGTGATCGTTTTCCTGAGAA
GTCGATTATTTTTCCTAGAAGCCATTGCAATCAGTGTGGGCATCCGTTACATTTTTTCGAAATGATTCCGATCCTATCAC
AACTTTTCTTAAGGTTCAAATGTCGGTTATGTCAAAGCTCTATCCCATACCGTTACCTCTTCTTGGAATTGTTTTGTGGA
GGAATACTTCTTCTTTATTTCTATGACTACCTAGATTTCGGAAGAACCTATTTGCTTTTTTTCAGTCTTTGTCTAACTAT
TTTTGATTTAAAAAATAAATCATATCCCCTTCTAATTTGGATTCTTGGAACACTACCTCTCCTATGTTTGGGAAACCACT
ACCTCACTTTTAGCTTAGGAATAAGTTTAGCCGTTCTGTCATATATCAAACGTTTAAATATTGGTGAAGGTGATTTTCTC
TATTTGGCCAGTGTCTCCCTCATTTTCCCATTTTCCAAAATACTAATAGCTATTGAACTAGCTTGCTCATTTGGGCTTAT
GTACTTCCTAGTACGTAAAAACCCTAATGAAACAGTCGCTTTTGTCCCATTTCTCTTTATGAGTGTTCTAATTCTTACCT
TCATGTAA

Domains

Predicted by InterProScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(9-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cclA/cilC Streptococcus mitis SK321

39.252

99.535

0.391
  cclA/cilC Streptococcus pneumoniae TIGR4

39.252

99.535

0.391
  cclA/cilC Streptococcus mitis NCTC 12261

38.785

99.535

0.386
  cclA/cilC Streptococcus pneumoniae Rx1

38.318

99.535

0.381
  cclA/cilC Streptococcus pneumoniae D39

38.318

99.535

0.381
  cclA/cilC Streptococcus pneumoniae R6

38.318

99.535

0.381