Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   STAVA116_RS01840 Genome accession   NZ_CP065498
Coordinates   342120..342782 (+) Length   220 a.a.
NCBI ID   WP_002949747.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain AVA116     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 337120..347782
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STAVA116_RS01815 (STAVA116_01810) - 337438..338148 (+) 711 WP_087009691.1 ABC transporter ATP-binding protein -
  STAVA116_RS01820 (STAVA116_01815) - 338284..338944 (+) 661 Protein_319 CBS and ACT domain-containing protein -
  STAVA116_RS01825 (STAVA116_01820) cysK 339111..340037 (-) 927 WP_014607992.1 cysteine synthase A -
  STAVA116_RS01830 (STAVA116_01825) - 340139..340765 (-) 627 WP_002949745.1 YigZ family protein -
  STAVA116_RS01835 (STAVA116_01830) comFA/cflA 340820..342139 (+) 1320 WP_011225516.1 DEAD/DEAH box helicase Machinery gene
  STAVA116_RS01840 (STAVA116_01835) comFC/cflB 342120..342782 (+) 663 WP_002949747.1 ComF family protein Machinery gene
  STAVA116_RS01845 (STAVA116_01840) raiA 342861..343409 (+) 549 WP_022096635.1 ribosome-associated translation inhibitor RaiA -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 26037.39 Da        Isoelectric Point: 8.9833

>NTDB_id=449328 STAVA116_RS01840 WP_002949747.1 342120..342782(+) (comFC/cflB) [Streptococcus thermophilus strain AVA116]
MKCLLCNEWIEPVAQLSDLIMFKQRREYSCEDCKAQFKKLGKARCSNCYKIIDGNSCFDCKIWAKKGYIPKHFAIYRYEE
NMKEYFSRYKFMGDYCLRKIFQQEIKANLKSFLKKGYILVPVPLSEERLEERGFNQVKGLLEGIPYKNIFEKREIEKQSS
RTREERLSQDNSFSLKKGIELPSKIIIIDDIYTTGSTLYQMVKLLDDLDVKEVLTFSLAR

Nucleotide


Download         Length: 663 bp        

>NTDB_id=449328 STAVA116_RS01840 WP_002949747.1 342120..342782(+) (comFC/cflB) [Streptococcus thermophilus strain AVA116]
ATGAAGTGTCTACTATGTAATGAATGGATTGAACCAGTAGCTCAATTAAGTGATTTAATTATGTTTAAACAAAGAAGAGA
GTATTCTTGTGAAGATTGTAAAGCTCAATTTAAAAAGCTTGGGAAGGCGAGATGTTCAAATTGTTATAAAATAATAGATG
GAAATAGTTGCTTTGATTGCAAAATTTGGGCGAAAAAAGGCTATATTCCAAAACATTTTGCCATTTATCGTTATGAAGAA
AACATGAAAGAGTATTTTAGTCGCTATAAATTTATGGGAGATTATTGTCTTAGAAAAATATTTCAACAAGAAATTAAAGC
CAATTTAAAGTCTTTTTTAAAGAAAGGTTATATCTTAGTACCTGTCCCCTTGTCGGAAGAACGCCTGGAAGAGAGAGGAT
TCAATCAAGTTAAAGGATTACTAGAGGGAATCCCCTATAAAAACATTTTTGAAAAAAGAGAGATCGAGAAGCAATCCTCG
AGAACACGCGAAGAGCGGTTAAGTCAAGATAATTCTTTCAGTTTGAAAAAAGGTATTGAGCTACCAAGTAAGATCATCAT
AATCGATGATATTTACACAACAGGATCTACCCTGTATCAAATGGTCAAACTATTAGATGATTTAGATGTCAAAGAAGTTT
TGACATTTTCCTTAGCTAGATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus mitis NCTC 12261

45.045

100

0.455
  comFC/cflB Streptococcus mitis SK321

44.595

100

0.45
  comFC/cflB Streptococcus pneumoniae Rx1

43.694

100

0.441
  comFC/cflB Streptococcus pneumoniae D39

43.694

100

0.441
  comFC/cflB Streptococcus pneumoniae R6

43.694

100

0.441
  comFC/cflB Streptococcus pneumoniae TIGR4

43.694

100

0.441