Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   G4D73_RS10350 Genome accession   NZ_CP053947
Coordinates   2219038..2220177 (-) Length   379 a.a.
NCBI ID   WP_213686721.1    Uniprot ID   -
Organism   Acinetobacter sp. WY4     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2214038..2225177
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G4D73_RS10325 - 2214276..2215292 (-) 1017 WP_213686719.1 pirin family protein -
  G4D73_RS10330 - 2215423..2216022 (-) 600 WP_004281004.1 hypothetical protein -
  G4D73_RS10335 - 2216350..2216895 (-) 546 WP_004281007.1 glutathione peroxidase -
  G4D73_RS10340 - 2217086..2217982 (+) 897 WP_213686720.1 DMT family transporter -
  G4D73_RS10345 - 2218427..2218996 (-) 570 WP_044112401.1 L-threonylcarbamoyladenylate synthase -
  G4D73_RS10350 dprA 2219038..2220177 (-) 1140 WP_213686721.1 DNA-processing protein DprA Machinery gene
  G4D73_RS10355 tsaP 2220234..2221388 (-) 1155 WP_213686722.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  G4D73_RS10360 def 2221509..2222039 (+) 531 WP_004644875.1 peptide deformylase -
  G4D73_RS10365 - 2222132..2222542 (+) 411 WP_004644876.1 DUF2946 family protein -
  G4D73_RS10370 - 2222615..2224678 (+) 2064 WP_213686723.1 TonB-dependent copper receptor -

Sequence

Protein


Download         Length: 379 a.a.        Molecular weight: 42531.42 Da        Isoelectric Point: 6.7194

>NTDB_id=449302 G4D73_RS10350 WP_213686721.1 2219038..2220177(-) (dprA) [Acinetobacter sp. WY4]
MLNPLSRAQLETITLWYLVQHSLSSFYKISQHYAELAHALQPDQVPVWQALGLHANHVQRLKEFYLPEAQQKFQRCLQQI
QQDSDFILLHSDPHYPQQLHPYADKPPIIFGQGRSDTLLQAQIAIVGSRKPSPHGRQVAYDFAFYLSEQGFYINSGLAYG
IDEAAHRAALQHQGTIAVMATGLDQTYPAQHQSLRQQIIEYGGAVISEFLPDTLPLQHHFPRRNRIVSGLSLGVIVAEAA
LKSGSLITAKLAAEQGKTVFAIPGHIYSEHYQGCHQLIREGAILIDHPQQVIEELALATQWQALENTTKTKVTEATSQQI
PPHLLSLYNQLDWVGQSLDQLGTQVQQEVSALTSQLMELELLGFCTQQAGLYLRCRILK

Nucleotide


Download         Length: 1140 bp        

>NTDB_id=449302 G4D73_RS10350 WP_213686721.1 2219038..2220177(-) (dprA) [Acinetobacter sp. WY4]
ATGCTGAACCCGTTATCACGCGCGCAACTGGAAACAATTACGTTATGGTATCTGGTTCAGCATTCTCTTTCGAGTTTCTA
TAAAATCAGTCAACATTATGCCGAACTGGCGCATGCCCTTCAGCCGGATCAAGTACCCGTCTGGCAAGCACTCGGCCTTC
ATGCCAATCATGTGCAGCGCTTAAAAGAGTTTTACCTCCCAGAAGCGCAGCAAAAATTTCAGCGATGTCTGCAGCAGATC
CAGCAGGATAGCGATTTTATTTTGCTGCACAGCGATCCGCATTATCCTCAGCAGTTGCATCCTTATGCAGATAAACCACC
GATCATTTTTGGTCAGGGTAGATCCGATACCCTGCTTCAGGCACAGATTGCCATTGTGGGCAGCCGCAAACCCAGTCCAC
ACGGCCGGCAAGTAGCTTATGACTTTGCTTTTTATTTGAGTGAACAGGGTTTCTATATCAATAGCGGTCTGGCATACGGT
ATTGATGAAGCAGCGCATCGGGCTGCGTTACAGCATCAAGGCACGATTGCGGTGATGGCGACCGGACTGGATCAAACCTA
TCCAGCACAACATCAATCACTACGCCAGCAAATCATTGAGTACGGTGGTGCAGTAATCAGTGAGTTTCTACCAGATACGC
TGCCTTTGCAGCACCATTTCCCACGGCGCAACCGAATCGTCAGTGGTTTAAGTCTAGGTGTGATTGTGGCAGAAGCTGCA
TTAAAAAGTGGTTCTCTGATTACGGCTAAACTGGCAGCTGAGCAAGGTAAAACTGTGTTTGCCATTCCGGGACATATTTA
CAGCGAGCATTATCAGGGTTGTCACCAACTGATTCGTGAGGGTGCGATTCTGATTGACCATCCACAGCAGGTCATCGAAG
AACTGGCACTGGCGACGCAATGGCAGGCTTTAGAAAATACCACCAAAACGAAAGTTACTGAAGCAACATCACAGCAAATT
CCACCGCATCTGCTCAGTCTGTATAATCAGCTGGACTGGGTGGGACAGAGTTTGGATCAACTGGGAACGCAGGTTCAGCA
AGAGGTATCTGCTTTGACCAGCCAACTCATGGAACTGGAGTTACTCGGTTTTTGTACCCAGCAAGCCGGCCTCTATCTAC
GTTGTCGGATTCTCAAATAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(86-285)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Acinetobacter baumannii strain A118

64.362

99.208

0.639
  dprA Acinetobacter baumannii D1279779

63.298

99.208

0.628
  dprA Acinetobacter baylyi ADP1

59.211

100

0.594