Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   G4D73_RS10355 Genome accession   NZ_CP053947
Coordinates   2220234..2221388 (-) Length   384 a.a.
NCBI ID   WP_213686722.1    Uniprot ID   -
Organism   Acinetobacter sp. WY4     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2215234..2226388
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G4D73_RS10330 - 2215423..2216022 (-) 600 WP_004281004.1 hypothetical protein -
  G4D73_RS10335 - 2216350..2216895 (-) 546 WP_004281007.1 glutathione peroxidase -
  G4D73_RS10340 - 2217086..2217982 (+) 897 WP_213686720.1 DMT family transporter -
  G4D73_RS10345 - 2218427..2218996 (-) 570 WP_044112401.1 L-threonylcarbamoyladenylate synthase -
  G4D73_RS10350 dprA 2219038..2220177 (-) 1140 WP_213686721.1 DNA-processing protein DprA Machinery gene
  G4D73_RS10355 tsaP 2220234..2221388 (-) 1155 WP_213686722.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  G4D73_RS10360 def 2221509..2222039 (+) 531 WP_004644875.1 peptide deformylase -
  G4D73_RS10365 - 2222132..2222542 (+) 411 WP_004644876.1 DUF2946 family protein -
  G4D73_RS10370 - 2222615..2224678 (+) 2064 WP_213686723.1 TonB-dependent copper receptor -

Sequence

Protein


Download         Length: 384 a.a.        Molecular weight: 42105.32 Da        Isoelectric Point: 9.0682

>NTDB_id=449303 G4D73_RS10355 WP_213686722.1 2220234..2221388(-) (tsaP) [Acinetobacter sp. WY4]
MKKVLKGMPFFSALGFKNQILALAVCVGVSMGTIHSAEAAPARNVNPPALKANAPNVYVVKKGDTLWDISKRFLKNPVRW
PEIWASNKHVKNPNWIFPGDRLLMCDYQGRPIIGKDEGDGCEGIISRYLGSTSLQPQIRVESLNNTIPVIPLEHIKQWLE
RYTLLAPDSVQGTPYILGTADQRVLAGKGQKVYARGHGLVVGQRYAVYREAEPYVFTDANGKKYTAALELQQVASGIAVR
GEGDVTTLELTDSYNAEVRRGDRVLPEYDPMLPTLFYPTNAENIAAGGQIVRVLGSIGTAARHSVVTIDRGTAHGVQTGH
VFSVNQKGEVVTDPKTKERVQLPGERIGQIMVFKNFDQLSYAYVLESELPIKVGAGIQAPLLDE

Nucleotide


Download         Length: 1155 bp        

>NTDB_id=449303 G4D73_RS10355 WP_213686722.1 2220234..2221388(-) (tsaP) [Acinetobacter sp. WY4]
ATGAAAAAGGTTTTGAAGGGCATGCCATTTTTTAGTGCCTTGGGGTTTAAAAATCAGATACTGGCACTTGCAGTTTGTGT
AGGCGTCAGTATGGGGACCATTCATTCTGCCGAGGCAGCACCTGCACGCAACGTCAATCCACCGGCATTAAAAGCTAATG
CACCGAACGTTTATGTGGTGAAAAAAGGCGATACGCTTTGGGATATCTCGAAACGCTTCCTGAAAAATCCGGTCCGTTGG
CCGGAAATCTGGGCCAGTAATAAGCACGTGAAAAATCCAAATTGGATTTTCCCGGGTGACCGCCTGCTGATGTGTGATTA
CCAAGGCCGTCCGATTATTGGTAAAGACGAAGGTGATGGTTGTGAAGGTATTATCAGCCGCTATCTTGGCAGTACTTCTC
TGCAACCCCAGATTCGTGTTGAATCTTTAAATAATACGATTCCAGTGATTCCGCTTGAGCATATCAAGCAGTGGTTGGAA
CGCTATACCCTTCTGGCGCCTGATTCAGTTCAGGGCACACCCTACATTCTCGGAACTGCAGATCAGCGCGTACTGGCTGG
CAAAGGCCAGAAAGTTTATGCACGTGGTCACGGTCTGGTAGTGGGTCAACGCTATGCCGTTTATCGTGAAGCTGAACCGT
ATGTATTTACGGATGCAAACGGCAAGAAATATACTGCTGCACTTGAGCTGCAACAGGTGGCATCTGGTATTGCAGTTCGT
GGCGAAGGTGATGTCACCACACTTGAACTGACAGATAGTTACAATGCTGAAGTACGTCGCGGTGATCGTGTCTTACCAGA
ATACGATCCAATGTTACCGACTCTGTTCTATCCGACCAATGCAGAAAATATTGCTGCCGGTGGCCAGATTGTGCGTGTAT
TGGGGTCAATTGGTACAGCAGCACGTCATAGTGTTGTCACCATTGACCGTGGTACGGCACATGGAGTTCAGACGGGTCAT
GTCTTTAGTGTGAATCAAAAAGGTGAAGTGGTCACTGATCCTAAAACTAAAGAACGTGTGCAATTGCCAGGTGAGCGTAT
TGGCCAAATCATGGTATTCAAAAACTTCGATCAATTAAGCTATGCCTATGTGCTAGAGAGCGAATTACCAATCAAGGTTG
GTGCAGGAATTCAAGCACCTCTTTTAGATGAATAA

Domains

Predicted by InterproScan.

LysM domain (LysM)

(58-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

67.532

100

0.677