Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   G4D73_RS08555 Genome accession   NZ_CP053947
Coordinates   1812118..1812705 (-) Length   195 a.a.
NCBI ID   WP_004281391.1    Uniprot ID   A0A2K8UM26
Organism   Acinetobacter sp. WY4     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1807118..1817705
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G4D73_RS08530 - 1807878..1808105 (+) 228 WP_004647282.1 hypothetical protein -
  G4D73_RS08540 - 1808461..1809309 (-) 849 WP_213686525.1 SAM-dependent methyltransferase -
  G4D73_RS08545 - 1809313..1810620 (-) 1308 WP_005250386.1 FAD-dependent oxidoreductase -
  G4D73_RS08550 ahpC 1811243..1811806 (-) 564 WP_005108116.1 alkyl hydroperoxide reductase subunit C -
  G4D73_RS08555 ssb 1812118..1812705 (-) 588 WP_004281391.1 single-stranded DNA-binding protein Machinery gene
  G4D73_RS08560 - 1812757..1814121 (-) 1365 WP_035340698.1 MFS transporter -
  G4D73_RS08565 - 1814275..1815363 (-) 1089 WP_180180826.1 DUF475 domain-containing protein -
  G4D73_RS08570 tenA 1815586..1816257 (+) 672 WP_004729210.1 thiaminase II -
  G4D73_RS08575 - 1816480..1816848 (+) 369 WP_004729209.1 hypothetical protein -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 21359.06 Da        Isoelectric Point: 6.4820

>NTDB_id=449300 G4D73_RS08555 WP_004281391.1 1812118..1812705(-) (ssb) [Acinetobacter sp. WY4]
MRGVNKVILVGTLGKDPETKTFANGGSLTQFSIATSDSWTDKSTGERKEQTEWHRIVLHNRLGEIAQQYLRKGSKVYIEG
SLRTRQWTDQNGQERYTTEIRGEQMQMLDSSRPQNDQGESSFNQPRFNNNNQANNNQGGYGNNPQSGYGSAPQQGGFNNN
QGGGYGNNNPSGFAPKSAPAPTAAPAADLDDDLPF

Nucleotide


Download         Length: 588 bp        

>NTDB_id=449300 G4D73_RS08555 WP_004281391.1 1812118..1812705(-) (ssb) [Acinetobacter sp. WY4]
ATGCGTGGTGTAAATAAAGTTATTTTAGTGGGTACTTTGGGTAAAGATCCGGAAACCAAAACTTTTGCAAATGGTGGCTC
TCTCACTCAATTCTCGATCGCAACCAGCGATTCGTGGACAGATAAAAGTACCGGTGAACGTAAAGAACAAACGGAATGGC
ACCGTATCGTGTTGCATAACCGTTTAGGTGAAATTGCGCAGCAATATCTTCGTAAAGGCTCAAAAGTATATATTGAAGGT
TCATTACGTACCCGTCAGTGGACTGACCAGAATGGTCAGGAACGCTATACGACAGAAATCCGTGGTGAGCAAATGCAGAT
GCTAGACTCTAGCCGTCCTCAAAACGATCAGGGCGAGAGCAGCTTTAACCAGCCACGCTTTAATAACAATAATCAGGCGA
ACAACAACCAAGGCGGTTATGGCAATAACCCGCAATCGGGTTATGGTTCAGCGCCACAGCAAGGCGGTTTTAACAACAAT
CAGGGCGGCGGTTATGGCAACAATAACCCGAGTGGTTTTGCGCCGAAATCTGCACCTGCTCCAACAGCAGCGCCTGCAGC
AGATCTAGATGATGACTTACCATTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2K8UM26

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

51.759

100

0.528
  ssb Vibrio cholerae strain A1552

41.206

100

0.421
  ssb Neisseria meningitidis MC58

37.5

98.462

0.369
  ssb Neisseria gonorrhoeae MS11

37.5

98.462

0.369