Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   FOC66_RS02135 Genome accession   NZ_CP053939
Coordinates   456255..456782 (+) Length   175 a.a.
NCBI ID   WP_003746178.1    Uniprot ID   -
Organism   Neisseria mucosa strain FDAARGOS_758     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 456893..458119 456255..456782 flank 111


Gene organization within MGE regions


Location: 456255..458119
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC66_RS02135 (FOC66_02135) ssb 456255..456782 (+) 528 WP_003746178.1 single-stranded DNA-binding protein Machinery gene
  FOC66_RS02140 (FOC66_02140) - 456893..457897 (+) 1005 Protein_412 IS5 family transposase -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19609.64 Da        Isoelectric Point: 5.8022

>NTDB_id=449241 FOC66_RS02135 WP_003746178.1 456255..456782(+) (ssb) [Neisseria mucosa strain FDAARGOS_758]
MSLNKVILIGRLGRDPEVRYMPNGEAVCNFSVATSETWNDRNGQRVERTEWHNITMYRKLAEIAGQYLRKGSQVYLEGRI
QSRKYQGKDGIERTAYDIIANEMKMLGSRNDNSGGAPYDDGYNQGSHSSQSSYQQAPQQQYQSAPAQEPPAAPARRPAPA
QPTAPVEDIDDDIPF

Nucleotide


Download         Length: 528 bp        

>NTDB_id=449241 FOC66_RS02135 WP_003746178.1 456255..456782(+) (ssb) [Neisseria mucosa strain FDAARGOS_758]
ATGTCATTGAATAAAGTTATCCTCATCGGCCGTCTCGGCCGCGACCCGGAAGTCCGCTATATGCCCAACGGCGAGGCCGT
CTGTAACTTCAGCGTTGCCACCAGCGAAACTTGGAACGACCGCAACGGCCAACGCGTAGAACGTACCGAATGGCACAACA
TCACCATGTACCGCAAACTCGCCGAAATCGCCGGCCAATACCTGCGTAAAGGCAGCCAAGTGTATTTGGAAGGCCGTATC
CAAAGCCGTAAATACCAAGGCAAAGACGGTATCGAGCGCACCGCTTACGACATCATCGCCAATGAGATGAAAATGCTCGG
CAGCCGCAACGACAACAGCGGCGGCGCACCATACGATGACGGCTACAACCAAGGCAGTCATTCAAGCCAAAGCAGTTACC
AACAAGCGCCTCAACAGCAATACCAATCTGCCCCGGCGCAAGAACCCCCGGCCGCCCCGGCCCGTCGTCCTGCTCCGGCA
CAACCGACCGCTCCGGTTGAGGATATCGACGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Neisseria gonorrhoeae MS11

81.667

100

0.84
  ssb Neisseria meningitidis MC58

81.111

100

0.834
  ssb Vibrio cholerae strain A1552

49.438

100

0.503
  ssb Glaesserella parasuis strain SC1401

47.027

100

0.497