Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HP062_RS17485 Genome accession   NZ_CP053929
Coordinates   3813519..3814046 (-) Length   175 a.a.
NCBI ID   WP_010467282.1    Uniprot ID   A0A6L5BQP5
Organism   Pseudomonas sp. B14-6     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3808519..3819046
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HP062_RS17465 (HP062_17465) - 3808790..3809218 (+) 429 WP_010467290.1 DUF350 domain-containing protein -
  HP062_RS17470 (HP062_17470) - 3809237..3809956 (+) 720 WP_010467288.1 DUF1190 domain-containing protein -
  HP062_RS17475 (HP062_17475) - 3809969..3811126 (+) 1158 WP_172791796.1 glutathionylspermidine synthase family protein -
  HP062_RS17480 (HP062_17480) - 3811247..3813450 (+) 2204 Protein_3492 OsmC domain/YcaO domain-containing protein -
  HP062_RS17485 (HP062_17485) ssb 3813519..3814046 (-) 528 WP_010467282.1 single-stranded DNA-binding protein Machinery gene
  HP062_RS17490 (HP062_17490) - 3814056..3815453 (-) 1398 WP_010467280.1 MFS transporter -
  HP062_RS17495 (HP062_17495) uvrA 3815645..3818479 (+) 2835 WP_010467278.1 excinuclease ABC subunit UvrA -
  HP062_RS17500 (HP062_17500) bfr 3818545..3819009 (-) 465 WP_010467276.1 bacterioferritin -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19396.56 Da        Isoelectric Point: 5.9314

>NTDB_id=449077 HP062_RS17485 WP_010467282.1 3813519..3814046(-) (ssb) [Pseudomonas sp. B14-6]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQQGDQQGGGNNYQQSAPAPRQQAPRPQQSAPQQSRQAPPPQQAAP
QPAPDFDSFDDDIPF

Nucleotide


Download         Length: 528 bp        

>NTDB_id=449077 HP062_RS17485 WP_010467282.1 3813519..3814046(-) (ssb) [Pseudomonas sp. B14-6]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGCACTTGCGGCCAGGATCCCGAAGTTCGCTACTTGCCTAACGGTAA
CGCCGTGACCAACCTGAGTCTGGCGACCAGCGAACAGTGGACCGACAAGCAAACCGGTCAGAAGGTCGAGAAGACTGAAT
GGCACCGTGTTTCGATGTTCGGCAAGGTGGCCGAGATCGCCGGTGAATACCTGCGTAAAGGTTCGCAGGTCTACATCGAA
GGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGTATCAAGCGTTACACCACCGAAATCGTGGTCGACATGCAAGGCAC
CATGCAACTGCTCGGCGGCCGTCCACAGCAGGGCGACCAACAAGGCGGGGGCAATAACTACCAGCAGTCCGCCCCGGCTC
CACGCCAGCAGGCTCCGCGCCCGCAGCAGTCAGCACCGCAGCAGTCGCGTCAGGCTCCGCCTCCACAGCAGGCAGCGCCA
CAACCGGCTCCGGATTTCGACAGCTTTGATGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6L5BQP5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

57.065

100

0.6
  ssb Glaesserella parasuis strain SC1401

46.354

100

0.509
  ssb Neisseria meningitidis MC58

47.514

100

0.491
  ssb Neisseria gonorrhoeae MS11

47.514

100

0.491