Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HP437_RS24115 Genome accession   NZ_CP053927
Coordinates   4845993..4846526 (-) Length   177 a.a.
NCBI ID   WP_180547861.1    Uniprot ID   -
Organism   Serratia marcescens strain 11/2010     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4840993..4851526
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HP437_RS24085 (HP437_24090) - 4841616..4842287 (-) 672 WP_180547856.1 HAD family phosphatase -
  HP437_RS24090 (HP437_24095) - 4842284..4842514 (-) 231 WP_180547857.1 tautomerase family protein -
  HP437_RS24095 (HP437_24100) - 4842523..4843356 (-) 834 WP_180547858.1 hypothetical protein -
  HP437_RS24100 (HP437_24105) - 4843349..4844143 (-) 795 WP_180547859.1 AfsA-related hotdog domain-containing protein -
  HP437_RS24105 (HP437_24110) - 4844159..4844773 (-) 615 WP_180547860.1 hypothetical protein -
  HP437_RS24110 (HP437_24115) - 4845018..4845932 (+) 915 WP_087762596.1 LysR family transcriptional regulator -
  HP437_RS24115 (HP437_24120) ssb 4845993..4846526 (-) 534 WP_180547861.1 single-stranded DNA-binding protein SSB1 Machinery gene
  HP437_RS24120 (HP437_24125) uvrA 4846804..4849632 (+) 2829 WP_180547862.1 excinuclease ABC subunit UvrA -
  HP437_RS24125 (HP437_24130) - 4849858..4850910 (+) 1053 WP_180547863.1 NAD(P)-dependent alcohol dehydrogenase -
  HP437_RS24130 (HP437_24135) maa 4850941..4851498 (-) 558 WP_180547864.1 maltose O-acetyltransferase -

Sequence

Protein


Download         Length: 177 a.a.        Molecular weight: 18807.72 Da        Isoelectric Point: 5.2358

>NTDB_id=449049 HP437_RS24115 WP_180547861.1 4845993..4846526(-) (ssb) [Serratia marcescens strain 11/2010]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEQKEKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGSLQTRKWQDQSGQDRYTTEIVVNVGGTMQMLGGRQGGGAPAGQSAGGQGGWGQPQQPQGGNQFSGGQQPSRPAQSSAP
AASSNEPPMDFDDDIPF

Nucleotide


Download         Length: 534 bp        

>NTDB_id=449049 HP437_RS24115 WP_180547861.1 4845993..4846526(-) (ssb) [Serratia marcescens strain 11/2010]
ATGGCCAGCAGAGGCGTAAACAAAGTAATTCTGGTCGGGAATCTGGGTCAGGATCCAGAAGTCCGTTACATGCCGAACGG
CGGCGCAGTGGCCAACATTACCCTGGCGACCTCCGAAAGCTGGCGTGACAAGGCGACCGGCGAACAGAAAGAGAAGACCG
AGTGGCACCGCGTCGTGCTGTTCGGCAAACTGGCCGAAGTGGCGGGCGAATACCTGCGCAAGGGCTCTCAGGTCTACATC
GAAGGCTCCCTGCAGACCCGTAAATGGCAGGATCAGAGCGGCCAGGATCGCTACACCACCGAGATCGTGGTTAACGTCGG
CGGCACCATGCAGATGCTGGGCGGCCGTCAGGGCGGCGGCGCACCGGCTGGTCAATCTGCCGGCGGCCAGGGCGGTTGGG
GCCAGCCTCAGCAGCCACAGGGCGGCAACCAGTTCAGCGGTGGCCAGCAGCCGTCTCGCCCGGCGCAGAGCAGCGCTCCG
GCGGCCAGCAGCAACGAACCGCCAATGGATTTCGACGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

73.656

100

0.774
  ssb Glaesserella parasuis strain SC1401

59.358

100

0.627
  ssb Neisseria meningitidis MC58

46.927

100

0.475
  ssb Neisseria gonorrhoeae MS11

46.927

100

0.475