Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HP437_RS22965 Genome accession   NZ_CP053927
Coordinates   4591202..4591753 (-) Length   183 a.a.
NCBI ID   WP_143778522.1    Uniprot ID   -
Organism   Serratia marcescens strain 11/2010     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4586202..4596753
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HP437_RS22925 (HP437_22930) - 4586624..4587250 (-) 627 WP_180547786.1 restriction endonuclease -
  HP437_RS22930 (HP437_22935) - 4587247..4587771 (-) 525 WP_180547787.1 integrating conjugative element protein -
  HP437_RS22935 (HP437_22940) - 4587774..4588466 (-) 693 WP_180547788.1 transglycosylase SLT domain-containing protein -
  HP437_RS22940 (HP437_22945) - 4588445..4589155 (-) 711 WP_180547789.1 TIGR03759 family integrating conjugative element protein -
  HP437_RS22945 (HP437_22950) - 4589166..4589909 (-) 744 WP_180547790.1 hypothetical protein -
  HP437_RS22950 (HP437_22955) - 4589906..4590550 (-) 645 WP_180547791.1 PilL N-terminal domain-containing protein -
  HP437_RS22955 (HP437_22960) - 4590697..4590969 (-) 273 WP_099981562.1 DUF2442 domain-containing protein -
  HP437_RS22960 (HP437_22965) - 4590950..4591186 (-) 237 WP_012146806.1 DUF4160 domain-containing protein -
  HP437_RS22965 (HP437_22970) ssb 4591202..4591753 (-) 552 WP_143778522.1 single-stranded DNA-binding protein Machinery gene
  HP437_RS22970 (HP437_22975) - 4591826..4592293 (-) 468 WP_180547792.1 STY4534 family ICE replication protein -
  HP437_RS22975 (HP437_22980) - 4593008..4595047 (-) 2040 WP_180547793.1 DNA topoisomerase III -
  HP437_RS22980 (HP437_22985) - 4595061..4595633 (-) 573 WP_089186708.1 hypothetical protein -
  HP437_RS22985 (HP437_22990) - 4595630..4596379 (-) 750 WP_180547794.1 PFL_4669 family integrating conjugative element protein -

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 19585.92 Da        Isoelectric Point: 7.3143

>NTDB_id=449048 HP437_RS22965 WP_143778522.1 4591202..4591753(-) (ssb) [Serratia marcescens strain 11/2010]
MASRGVNKVILVGHLGQDPEVRYMPNGGAVANITLATSESWRDKATGEQKEKTEWHRVVLFGKLAEIAGEYLRKGSQVYI
EGSLQTRKWTDQAGVEKYTTEIVVNIGGTLQMLGGRSQPANAGQSGQGSWGKPQQPQPSHSGTPAQQPQPAQSGGNAAPM
DFDDDIPFLGFGYGIAKSAIYAL

Nucleotide


Download         Length: 552 bp        

>NTDB_id=449048 HP437_RS22965 WP_143778522.1 4591202..4591753(-) (ssb) [Serratia marcescens strain 11/2010]
ATGGCGTCTCGCGGCGTAAACAAAGTCATACTTGTCGGCCATCTCGGCCAGGATCCGGAAGTCCGTTACATGCCAAATGG
CGGTGCGGTTGCTAACATTACCCTGGCGACCTCTGAGAGCTGGCGCGATAAAGCAACCGGTGAGCAGAAAGAAAAAACCG
AATGGCACCGTGTTGTGTTGTTCGGCAAGCTTGCTGAAATTGCCGGTGAATATTTGCGTAAAGGCTCGCAGGTTTACATA
GAAGGCTCCCTGCAGACACGCAAATGGACCGATCAGGCCGGTGTTGAAAAATATACGACTGAAATCGTCGTCAACATTGG
CGGCACTCTGCAGATGTTGGGGGGGCGTTCGCAACCTGCCAACGCAGGACAATCAGGCCAGGGCAGTTGGGGGAAACCTC
AGCAACCGCAACCTTCGCACAGCGGTACGCCGGCTCAGCAACCCCAGCCAGCTCAATCGGGTGGAAATGCCGCGCCGATG
GATTTTGACGATGACATACCGTTCCTTGGGTTTGGTTACGGTATCGCAAAATCAGCCATTTACGCTCTGTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

69.444

98.361

0.683
  ssb Glaesserella parasuis strain SC1401

51.934

98.907

0.514
  ssb Neisseria gonorrhoeae MS11

46.154

99.454

0.459
  ssb Neisseria meningitidis MC58

45.604

99.454

0.454