Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HQ394_RS17955 Genome accession   NZ_CP053923
Coordinates   3927394..3927873 (+) Length   159 a.a.
NCBI ID   WP_190261340.1    Uniprot ID   A0A7H1N592
Organism   Defluviicoccus vanus strain Ben 114     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3922394..3932873
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HQ394_RS17945 (HQ394_18090) - 3922606..3923997 (-) 1392 WP_190261338.1 TrkH family potassium uptake protein -
  HQ394_RS17950 (HQ394_18095) uvrA 3924274..3927123 (-) 2850 WP_190261339.1 excinuclease ABC subunit UvrA -
  HQ394_RS17955 (HQ394_18100) ssb 3927394..3927873 (+) 480 WP_190261340.1 single-stranded DNA-binding protein Machinery gene
  HQ394_RS17960 (HQ394_18105) gyrA 3928134..3930932 (+) 2799 WP_190261341.1 DNA gyrase subunit A -
  HQ394_RS17965 (HQ394_18110) coaD 3931057..3931584 (+) 528 WP_190261342.1 pantetheine-phosphate adenylyltransferase -
  HQ394_RS21355 (HQ394_18120) - 3931886..3932263 (-) 378 WP_190263395.1 tyrosine-type recombinase/integrase -

Sequence

Protein


Download         Length: 159 a.a.        Molecular weight: 17435.46 Da        Isoelectric Point: 5.9778

>NTDB_id=449007 HQ394_RS17955 WP_190261340.1 3927394..3927873(+) (ssb) [Defluviicoccus vanus strain Ben 114]
MAGSVNKVILVGNLGRDPEVRQLQDGSKVVQFSVATSERWKDRGSGEMRERTEWHRVVIFNDRLAEVAERYLRKGSKIYL
EGSLQTRKWTGNDGQERTTTEVVLGRFKGELTMLDGRGDASGMGSGAGGGADMGYQPMDPAPASSGRRAAQDLDDEIPF

Nucleotide


Download         Length: 480 bp        

>NTDB_id=449007 HQ394_RS17955 WP_190261340.1 3927394..3927873(+) (ssb) [Defluviicoccus vanus strain Ben 114]
ATGGCTGGTTCGGTCAACAAGGTCATTCTCGTCGGCAACCTCGGTCGTGACCCCGAGGTGCGGCAACTGCAGGACGGCAG
CAAGGTCGTCCAGTTTTCCGTGGCCACGTCGGAGCGGTGGAAAGACCGCGGCTCCGGTGAGATGCGTGAGCGGACGGAGT
GGCACCGGGTGGTCATCTTCAACGATCGCTTGGCCGAGGTGGCGGAACGCTATCTGCGCAAGGGCTCGAAGATCTATCTG
GAGGGCTCGCTGCAGACCCGCAAGTGGACCGGCAACGACGGCCAGGAGCGGACGACCACGGAAGTGGTGCTGGGCCGCTT
CAAGGGCGAATTGACCATGCTTGATGGTCGCGGTGACGCAAGTGGGATGGGCAGCGGCGCCGGCGGTGGGGCAGACATGG
GATATCAGCCGATGGACCCGGCGCCAGCCTCGTCGGGGAGGCGGGCTGCGCAGGATCTGGACGACGAGATCCCCTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7H1N592

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

44.149

100

0.522
  ssb Vibrio cholerae strain A1552

46.821

100

0.509
  ssb Neisseria meningitidis MC58

43.956

100

0.503
  ssb Neisseria gonorrhoeae MS11

42.935

100

0.497