Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   HQN50_RS25015 Genome accession   NZ_CP053922
Coordinates   5328428..5329765 (+) Length   445 a.a.
NCBI ID   WP_023088571.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain YD001     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5323428..5334765
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HQN50_RS24990 pgeF 5323571..5324299 (-) 729 WP_003102588.1 peptidoglycan editing factor PgeF -
  HQN50_RS24995 rluD 5324296..5325258 (-) 963 WP_003094686.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  HQN50_RS25000 - 5325404..5326429 (+) 1026 WP_003102590.1 outer membrane protein assembly factor BamD -
  HQN50_RS25005 - 5326586..5326831 (+) 246 WP_003102591.1 PP0621 family protein -
  HQN50_RS25010 pilS 5326821..5328413 (+) 1593 WP_003094692.1 two-component system sensor histidine kinase PilS Regulator
  HQN50_RS25015 pilR 5328428..5329765 (+) 1338 WP_023088571.1 two-component system response regulator PilR Regulator
  HQN50_RS25020 thiO 5329811..5330905 (-) 1095 WP_023084775.1 glycine oxidase ThiO -
  HQN50_RS25025 - 5331040..5331549 (+) 510 WP_023088572.1 Tfp pilus assembly protein FimT/FimU -
  HQN50_RS25030 - 5331655..5332161 (+) 507 WP_003102598.1 Tfp pilus assembly protein FimT/FimU -
  HQN50_RS25035 pilV 5332152..5332709 (+) 558 WP_003119423.1 type 4a pilus minor pilin PilV Machinery gene
  HQN50_RS25040 pilW 5332706..5333530 (+) 825 WP_003119422.1 type 4a pilus minor pilin PilW -
  HQN50_RS25045 pilX 5333527..5334114 (+) 588 WP_003102605.1 type 4a pilus minor pilin PilX -

Sequence

Protein


Download         Length: 445 a.a.        Molecular weight: 49755.09 Da        Isoelectric Point: 5.8654

>NTDB_id=448992 HQN50_RS25015 WP_023088571.1 5328428..5329765(+) (pilR) [Pseudomonas aeruginosa strain YD001]
MSRQKALIVDDEPDIRELLEITLGRMKLDTRSARNVKEARELLAREPFDMCLTDMRLPDGSGLDLVQYIQQRHPQTPVAM
ITAYGSLDTAIQALKAGAFDFLTKPVDLGRLRELVATALRLRNPEAEEAPVDNRLLGESPPMRALRNQIGKLARSQAPVY
ISGESGSGKELVARLIHEQGPRIERPFVPVNCGAIPSELMESEFFGHKKGSFTGAIEDKQGLFQAASGGTLFLDEVADLP
MAMQVKLLRAIQEKAVRAVGGQQEVAVDVRILCATHKDLAAEVGAGRFRQDLYYRLNVIELRVPPLRERREDIPLLAERI
LKRLAGDTGLPAARLTGDAQEKLKNYRFPGNVRELENMLERAYTLCEDDQIQPHDLRLADAPGASQEGAASLSEIDNLED
YLEDIERKLIMQALEETRWNRTAAAQRLGLTFRSMRYRLKKLGID

Nucleotide


Download         Length: 1338 bp        

>NTDB_id=448992 HQN50_RS25015 WP_023088571.1 5328428..5329765(+) (pilR) [Pseudomonas aeruginosa strain YD001]
ATGAGCCGACAAAAAGCCCTGATCGTCGACGATGAACCGGATATCCGCGAACTGCTGGAAATCACTCTCGGCCGCATGAA
GCTGGACACCCGCAGCGCCCGCAACGTCAAGGAAGCCCGCGAGTTGCTGGCCCGCGAGCCGTTCGACATGTGCCTCACCG
ACATGCGCCTGCCGGACGGCAGCGGCCTCGATCTGGTCCAGTACATCCAGCAGCGCCATCCACAGACCCCGGTGGCCATG
ATCACCGCGTACGGCAGCCTGGACACCGCGATCCAGGCGCTCAAGGCCGGTGCCTTCGACTTCCTCACCAAACCGGTCGA
CCTCGGTCGCTTGCGGGAGCTGGTGGCAACCGCCCTGCGCTTGCGCAACCCGGAAGCCGAGGAAGCGCCGGTGGACAACC
GCCTGCTCGGCGAGTCGCCGCCGATGCGCGCCCTGCGCAACCAGATCGGCAAGTTGGCGCGCAGCCAGGCGCCGGTCTAC
ATCAGTGGCGAGTCCGGCAGCGGCAAGGAACTGGTGGCGCGCCTGATCCACGAGCAGGGGCCACGTATCGAGCGGCCGTT
CGTGCCGGTGAACTGCGGCGCGATTCCCTCCGAACTGATGGAAAGCGAGTTCTTCGGCCACAAGAAAGGCAGCTTCACTG
GCGCTATCGAAGACAAGCAGGGCCTGTTCCAGGCCGCCAGCGGCGGCACCCTGTTCCTCGACGAAGTCGCCGACCTGCCG
ATGGCCATGCAGGTCAAACTGCTCCGGGCGATCCAGGAAAAGGCCGTGCGCGCGGTCGGCGGCCAGCAGGAGGTCGCCGT
CGACGTGCGCATCCTCTGCGCCACCCACAAGGACCTCGCCGCCGAAGTCGGCGCCGGGCGCTTCCGCCAGGACCTCTACT
ACCGCCTCAACGTCATCGAGCTGCGCGTACCGCCGCTGCGCGAACGCCGCGAGGACATCCCGCTGCTCGCCGAACGCATC
CTCAAGCGCCTGGCCGGCGACACCGGCCTGCCGGCCGCCAGGCTGACCGGCGACGCACAGGAGAAGCTGAAGAACTACCG
CTTCCCGGGCAACGTCCGCGAGCTGGAAAACATGCTGGAGCGCGCCTACACCCTGTGCGAAGACGACCAGATCCAGCCTC
ACGACCTGCGCCTGGCCGATGCGCCGGGTGCCAGCCAGGAAGGCGCCGCGAGCCTGAGCGAAATAGACAACCTCGAGGAC
TACCTGGAAGACATCGAGCGCAAGCTGATCATGCAGGCGCTCGAGGAGACCCGCTGGAACCGCACCGCCGCGGCTCAGCG
TCTGGGCCTGACGTTCCGCTCGATGCGCTACCGCCTGAAAAAGCTGGGCATCGACTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(7-115)

Sigma-54 interaction domain (Sigma54_activat)

(135-301)

Bacterial regulatory protein, Fis family (HTH_8)

(402-442)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

99.775

100

0.998
  pilR Acinetobacter baumannii strain A118

51.198

100

0.528
  luxO Vibrio cholerae strain A1552

37.946

100

0.382