Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   HQN50_RS25035 Genome accession   NZ_CP053922
Coordinates   5332152..5332709 (+) Length   185 a.a.
NCBI ID   WP_003119423.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain YD001     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5327152..5337709
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HQN50_RS25015 pilR 5328428..5329765 (+) 1338 WP_023088571.1 two-component system response regulator PilR Regulator
  HQN50_RS25020 thiO 5329811..5330905 (-) 1095 WP_023084775.1 glycine oxidase ThiO -
  HQN50_RS25025 - 5331040..5331549 (+) 510 WP_023088572.1 Tfp pilus assembly protein FimT/FimU -
  HQN50_RS25030 - 5331655..5332161 (+) 507 WP_003102598.1 Tfp pilus assembly protein FimT/FimU -
  HQN50_RS25035 pilV 5332152..5332709 (+) 558 WP_003119423.1 type 4a pilus minor pilin PilV Machinery gene
  HQN50_RS25040 pilW 5332706..5333530 (+) 825 WP_003119422.1 type 4a pilus minor pilin PilW -
  HQN50_RS25045 pilX 5333527..5334114 (+) 588 WP_003102605.1 type 4a pilus minor pilin PilX -
  HQN50_RS25050 pilY1 5334126..5337617 (+) 3492 WP_003102607.1 type 4a pilus biogenesis protein PilY1 -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20061.15 Da        Isoelectric Point: 8.2255

>NTDB_id=448993 HQN50_RS25035 WP_003119423.1 5332152..5332709(+) (pilV) [Pseudomonas aeruginosa strain YD001]
MLLKSRHRSLHQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVERNKAAMLGSNLLESMRASPKALYDVKDQMA
TQSDFFKAKGSAFPTAPSSCTPLPDAIKDRLGCWAEQVKNELPGAGDLLKSDYYICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNAADSSADTSLCYYTLRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=448993 HQN50_RS25035 WP_003119423.1 5332152..5332709(+) (pilV) [Pseudomonas aeruginosa strain YD001]
ATGCTATTGAAATCGCGACACAGGTCGCTGCACCAATCCGGCTTCAGCATGATCGAAGTGCTGGTCGCCCTGCTGCTGAT
CAGCATCGGCGTGCTGGGCATGATCGCCATGCAGGGCAAGACCATCCAGTACACCGCCGACTCGGTCGAGCGCAACAAGG
CAGCCATGCTCGGCAGCAACCTGCTGGAAAGCATGCGGGCGAGCCCGAAGGCGCTGTACGACGTCAAGGACCAGATGGCC
ACGCAATCCGACTTCTTCAAGGCCAAGGGGTCGGCGTTCCCCACCGCGCCGTCCTCCTGCACGCCATTGCCCGACGCGAT
CAAGGACCGCCTGGGATGCTGGGCGGAACAGGTGAAGAACGAACTGCCAGGCGCTGGCGACCTGCTGAAGAGCGACTACT
ACATCTGCCGCAGCTCAAAGCCGGGCGACTGCGACGGCAAGGGCTCCATGCTGGAAATCCGCCTTGCCTGGCGCGGCAAG
CAAGGCGCCTGCGTCAACGCCGCCGACAGCAGCGCCGACACCTCCCTCTGCTACTACACCCTCAGGGTCGAGCCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(11-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

99.459

100

0.995