Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HQN50_RS03665 Genome accession   NZ_CP053922
Coordinates   769427..769924 (+) Length   165 a.a.
NCBI ID   WP_003114685.1    Uniprot ID   A0A0H2ZGD4
Organism   Pseudomonas aeruginosa strain YD001     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 764427..774924
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HQN50_RS03650 bfr 764435..764899 (+) 465 WP_003093668.1 bacterioferritin -
  HQN50_RS03655 uvrA 764971..767808 (-) 2838 WP_003093663.1 excinuclease ABC subunit UvrA -
  HQN50_RS03660 - 768022..769410 (+) 1389 WP_003103910.1 MFS transporter -
  HQN50_RS03665 ssb 769427..769924 (+) 498 WP_003114685.1 single-stranded DNA-binding protein Machinery gene
  HQN50_RS03670 pchA 770013..771443 (-) 1431 WP_003106948.1 isochorismate synthase PchA -
  HQN50_RS03675 pchB 771440..771745 (-) 306 WP_003106950.1 isochorismate lyase PchB -
  HQN50_RS03680 pchC 771745..772500 (-) 756 WP_003106952.1 pyochelin biosynthesis editing thioesterase PchC -
  HQN50_RS03685 pchD 772497..774140 (-) 1644 WP_003106954.1 pyochelin biosynthesis salicyl-AMP ligase PchD -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 18557.46 Da        Isoelectric Point: 5.2781

>NTDB_id=448971 HQN50_RS03665 WP_003114685.1 769427..769924(+) (ssb) [Pseudomonas aeruginosa strain YD001]
MARGVNKVILVGNVGGDPETRYMPNGNAVTNITLATSESWKDKQTGQQQERTEWHRVVFFGRLAEIAGEYLRKGSQVYVE
GSLRTRKWQGQDGQDRYTTEIVVDINGNMQLLGGRPSGDDSQRAPREPMQRPQQAPQQQSRPAPQQQPAPQPAQDYDSFD
DDIPF

Nucleotide


Download         Length: 498 bp        

>NTDB_id=448971 HQN50_RS03665 WP_003114685.1 769427..769924(+) (ssb) [Pseudomonas aeruginosa strain YD001]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTTGGTAACGTCGGTGGTGACCCGGAAACCCGCTACATGCCCAACGGCAA
TGCGGTGACCAACATCACCCTCGCCACCAGCGAGAGCTGGAAGGACAAGCAGACCGGCCAGCAACAGGAGCGCACCGAAT
GGCACCGCGTGGTGTTCTTCGGCCGCCTGGCGGAGATCGCCGGCGAGTACCTGCGCAAGGGTTCCCAGGTCTACGTCGAA
GGCAGCCTGCGCACCCGCAAGTGGCAGGGCCAGGACGGTCAGGATCGCTACACCACCGAGATCGTGGTCGACATCAACGG
CAACATGCAGTTGCTCGGCGGCCGCCCCTCCGGCGACGATTCGCAGCGCGCCCCGCGCGAGCCCATGCAGCGCCCGCAGC
AGGCCCCGCAGCAGCAGTCGCGTCCGGCCCCGCAGCAGCAACCGGCGCCGCAACCGGCCCAGGACTACGACAGCTTCGAC
GACGACATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZGD4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.659

100

0.636
  ssb Glaesserella parasuis strain SC1401

52.486

100

0.576
  ssb Neisseria gonorrhoeae MS11

48.045

100

0.521
  ssb Neisseria meningitidis MC58

47.486

100

0.515