Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HQR01_RS02910 Genome accession   NZ_CP053921
Coordinates   575270..575803 (-) Length   177 a.a.
NCBI ID   WP_173212396.1    Uniprot ID   A0A7D3XHE5
Organism   Erythrobacter mangrovi strain EB310     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 570270..580803
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HQR01_RS02875 (HQR01_02875) hslU 570345..571646 (-) 1302 WP_173212383.1 ATP-dependent protease ATPase subunit HslU -
  HQR01_RS02880 (HQR01_02880) hslV 571663..572223 (-) 561 WP_173212385.1 ATP-dependent protease subunit HslV -
  HQR01_RS02885 (HQR01_02885) - 572268..572726 (-) 459 WP_173212386.1 outer membrane protein assembly factor BamE -
  HQR01_RS02890 (HQR01_02890) - 572886..573401 (+) 516 WP_173212388.1 ubiquinol-cytochrome C chaperone family protein -
  HQR01_RS02895 (HQR01_02895) - 573398..573949 (+) 552 WP_173212390.1 DUF177 domain-containing protein -
  HQR01_RS02900 (HQR01_02900) - 574106..574549 (+) 444 WP_173212392.1 host attachment protein -
  HQR01_RS02905 (HQR01_02905) - 574653..574991 (-) 339 WP_173212394.1 cytochrome c -
  HQR01_RS02910 (HQR01_02910) ssb 575270..575803 (-) 534 WP_173212396.1 single-stranded DNA-binding protein Machinery gene
  HQR01_RS02915 (HQR01_02915) feoB 575901..577748 (-) 1848 WP_173212398.1 ferrous iron transport protein B -
  HQR01_RS02920 (HQR01_02920) - 577745..577984 (-) 240 WP_173212400.1 FeoA family protein -
  HQR01_RS02925 (HQR01_02925) - 578106..578765 (-) 660 WP_173212407.1 COQ9 family protein -
  HQR01_RS02930 (HQR01_02930) - 578770..579375 (-) 606 WP_234030230.1 ankyrin repeat domain-containing protein -
  HQR01_RS02935 (HQR01_02935) - 579473..580072 (+) 600 WP_173212410.1 SCO family protein -
  HQR01_RS02940 (HQR01_02940) - 580060..580515 (+) 456 WP_173212412.1 YcgN family cysteine cluster protein -

Sequence

Protein


Download         Length: 177 a.a.        Molecular weight: 18372.95 Da        Isoelectric Point: 4.9562

>NTDB_id=448964 HQR01_RS02910 WP_173212396.1 575270..575803(-) (ssb) [Erythrobacter mangrovi strain EB310]
MAGSLNKVMLIGNLGADPEIRSFQNGGKVANLRIATSETWKDRNTGERQERTEWHTVAIFSEGLVGVVERYLRKGSKVYV
EGSLQTRKWQDQSGNDRYSTEVVIRGMNGTLTMLDGPQGSGGGGGQRSGGNWDQGGSSGGSYGGAPSSGAAAGSGSGFGG
GASGGSNYDDLDDDIPF

Nucleotide


Download         Length: 534 bp        

>NTDB_id=448964 HQR01_RS02910 WP_173212396.1 575270..575803(-) (ssb) [Erythrobacter mangrovi strain EB310]
ATGGCCGGAAGCCTCAACAAAGTCATGCTGATCGGGAATCTCGGGGCCGATCCGGAAATCCGCAGCTTCCAGAATGGCGG
CAAGGTTGCGAACCTGCGCATCGCCACCAGCGAAACCTGGAAGGATCGCAACACCGGCGAGCGGCAGGAACGCACCGAGT
GGCACACCGTTGCGATCTTCTCCGAAGGCCTGGTCGGCGTGGTCGAGCGCTACCTGCGCAAGGGTTCCAAAGTCTATGTC
GAAGGGTCGCTCCAGACCCGCAAGTGGCAGGACCAGAGCGGCAACGATCGCTATTCGACCGAGGTTGTGATCCGCGGCAT
GAACGGCACGCTGACCATGCTTGACGGGCCCCAAGGTTCGGGTGGTGGTGGCGGCCAGCGCAGCGGCGGCAACTGGGATC
AGGGCGGAAGCTCTGGCGGAAGTTACGGTGGTGCTCCATCGAGCGGCGCGGCGGCCGGCTCGGGCAGCGGCTTCGGCGGC
GGCGCGTCAGGCGGTTCGAACTACGACGATCTCGACGACGACATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7D3XHE5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

48.603

100

0.492
  ssb Glaesserella parasuis strain SC1401

45.503

100

0.486
  ssb Neisseria meningitidis MC58

39.247

100

0.412
  ssb Neisseria gonorrhoeae MS11

38.71

100

0.407