Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HQM26_RS16140 Genome accession   NZ_CP053920
Coordinates   3466489..3467037 (-) Length   182 a.a.
NCBI ID   WP_003064700.1    Uniprot ID   A0A5S4SNL5
Organism   Comamonas thiooxydans strain QYY     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3461489..3472037
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HQM26_RS16120 moaC 3462229..3462702 (+) 474 WP_054074269.1 cyclic pyranopterin monophosphate synthase MoaC -
  HQM26_RS16125 - 3463360..3464628 (-) 1269 WP_177340958.1 O-antigen ligase -
  HQM26_RS16130 - 3464800..3465264 (-) 465 WP_081007696.1 pilin -
  HQM26_RS16135 - 3465453..3466172 (-) 720 WP_034394492.1 FHA domain-containing protein -
  HQM26_RS16140 ssb 3466489..3467037 (-) 549 WP_003064700.1 single-stranded DNA-binding protein Machinery gene
  HQM26_RS16145 - 3467293..3468465 (-) 1173 WP_054074354.1 MFS transporter -
  HQM26_RS16150 uvrA 3468692..3471760 (+) 3069 WP_054074267.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 20057.22 Da        Isoelectric Point: 5.9603

>NTDB_id=448954 HQM26_RS16140 WP_003064700.1 3466489..3467037(-) (ssb) [Comamonas thiooxydans strain QYY]
MASVNKVIIVGNLGRDPEMRTFPSGDQVANVTIATTDRWRDKNTGENREATEWHRVVFNGKLAEIVGQYLRKGSQVYVEG
SLRTRKWTDQASGQERYATEIRADAMQMLGSRQGGGQQQGGYGSDDGYGESSYEAPRRQAPAPMQQRPAPAPMQQRPAPA
PMAPPPQRAASGFDDMDDDIPF

Nucleotide


Download         Length: 549 bp        

>NTDB_id=448954 HQM26_RS16140 WP_003064700.1 3466489..3467037(-) (ssb) [Comamonas thiooxydans strain QYY]
ATGGCATCCGTCAACAAAGTCATCATCGTCGGCAATCTGGGTCGTGACCCCGAAATGCGCACTTTCCCCAGCGGCGATCA
GGTGGCCAATGTGACCATCGCCACCACAGACCGCTGGCGCGACAAGAACACCGGAGAAAACCGCGAAGCCACCGAATGGC
ACCGTGTGGTCTTCAACGGCAAACTGGCCGAAATCGTGGGTCAGTACCTGCGCAAAGGCAGCCAGGTCTATGTGGAAGGC
AGCCTGCGCACCCGCAAGTGGACCGACCAGGCCTCCGGCCAAGAACGCTACGCCACCGAAATCCGTGCCGACGCCATGCA
GATGCTGGGCAGCCGCCAGGGCGGTGGTCAGCAGCAAGGCGGCTACGGCAGCGATGATGGCTATGGCGAAAGCAGCTACG
AAGCACCCCGCCGTCAGGCTCCCGCTCCCATGCAGCAGCGCCCCGCACCGGCACCCATGCAGCAGCGTCCTGCTCCTGCA
CCCATGGCTCCTCCTCCCCAGCGCGCAGCTTCGGGGTTTGACGACATGGATGACGATATCCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5S4SNL5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

53.886

100

0.571
  ssb Glaesserella parasuis strain SC1401

51.562

100

0.544
  ssb Neisseria gonorrhoeae MS11

47.514

99.451

0.473
  ssb Neisseria meningitidis MC58

44.565

100

0.451