Detailed information    

insolico Bioinformatically predicted

Overview

Name   cclA/cilC   Type   Machinery gene
Locus tag   STCNRZ1575_RS03825 Genome accession   NZ_CP065490
Coordinates   715566..716213 (-) Length   215 a.a.
NCBI ID   WP_041827674.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain CNRZ1575     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 710566..721213
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STCNRZ1575_RS03810 (STCNRZ1575_03755) holA 712314..713348 (+) 1035 WP_002946639.1 DNA polymerase III subunit delta -
  STCNRZ1575_RS03815 (STCNRZ1575_03760) sodA 713444..714049 (+) 606 WP_011680996.1 superoxide dismutase SodA -
  STCNRZ1575_RS03820 (STCNRZ1575_03765) - 714146..715525 (+) 1380 WP_179971285.1 serine hydrolase -
  STCNRZ1575_RS03825 (STCNRZ1575_03770) cclA/cilC 715566..716213 (-) 648 WP_041827674.1 A24 family peptidase Machinery gene
  STCNRZ1575_RS03830 (STCNRZ1575_03775) - 716322..716843 (+) 522 WP_084828711.1 Dps family protein -
  STCNRZ1575_RS03835 (STCNRZ1575_03780) - 716932..717369 (+) 438 WP_011227072.1 Fur family transcriptional regulator -
  STCNRZ1575_RS03840 (STCNRZ1575_03785) - 717480..717686 (+) 207 WP_002950395.1 YqgQ family protein -
  STCNRZ1575_RS03845 (STCNRZ1575_03790) - 717679..718647 (+) 969 WP_260214173.1 ROK family glucokinase -
  STCNRZ1575_RS03850 (STCNRZ1575_03795) typA 718785..720635 (+) 1851 WP_002950397.1 translational GTPase TypA -
  STCNRZ1575_RS03855 (STCNRZ1575_03800) - 720655..720927 (+) 273 WP_002950398.1 DUF3165 family protein -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 24886.02 Da        Isoelectric Point: 8.5469

>NTDB_id=448725 STCNRZ1575_RS03825 WP_041827674.1 715566..716213(-) (cclA/cilC) [Streptococcus thermophilus strain CNRZ1575]
MLSILYFFLGTSLGSFIGLICDRFPEKSIIFPRSHCNQCGHPLRFFEMIPILSQLFLRFKCRLCQSSIPYRYLFLELFCG
GILLLYFYNYLDFGRTYLLFFSLCLTIFDLKNKSYPLLIWILGTLPLLCLGNHYLTFSLGISLAVLSYIKRLNIGEGDFL
YLASVSLIFPFSKILIAIELACSFGLMYFLVRKNPNETVAFVPFLFMSVLILTFM

Nucleotide


Download         Length: 648 bp        

>NTDB_id=448725 STCNRZ1575_RS03825 WP_041827674.1 715566..716213(-) (cclA/cilC) [Streptococcus thermophilus strain CNRZ1575]
ATGCTTAGTATTTTATATTTTTTTCTTGGTACCTCTTTAGGCTCGTTTATTGGATTGATTTGTGATCGTTTTCCTGAGAA
GTCGATTATTTTTCCTAGAAGCCATTGCAATCAGTGTGGGCATCCGTTACGTTTTTTCGAAATGATTCCGATCCTATCAC
AACTTTTCTTAAGGTTCAAATGTCGGTTATGTCAAAGCTCTATCCCATACCGTTATCTCTTCTTGGAATTGTTTTGTGGA
GGAATACTTCTTCTTTATTTCTATAACTACCTAGATTTTGGAAGAACCTATTTGCTTTTTTTCAGTCTTTGTCTAACTAT
TTTTGATTTAAAAAATAAATCATATCCCCTTCTAATTTGGATTCTTGGAACACTACCTCTCCTATGTTTGGGAAACCACT
ACCTCACTTTTAGCTTAGGAATAAGTTTAGCCGTTCTGTCATATATCAAACGTTTAAATATTGGTGAAGGTGATTTTCTC
TATTTGGCCAGTGTCTCCCTCATTTTCCCATTTTCCAAAATACTAATAGCTATTGAACTAGCTTGCTCATTTGGGCTTAT
GTACTTCCTAGTACGTAAAAACCCTAATGAAACAGTCGCTTTTGTCCCATTTCTCTTTATGAGTGTTCTAATTCTTACCT
TCATGTAA

Domains

Predicted by InterProScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(9-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cclA/cilC Streptococcus mitis SK321

39.72

99.535

0.395
  cclA/cilC Streptococcus pneumoniae TIGR4

39.72

99.535

0.395
  cclA/cilC Streptococcus mitis NCTC 12261

39.252

99.535

0.391
  cclA/cilC Streptococcus pneumoniae Rx1

38.785

99.535

0.386
  cclA/cilC Streptococcus pneumoniae D39

38.785

99.535

0.386
  cclA/cilC Streptococcus pneumoniae R6

38.785

99.535

0.386