Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   STCNRZ1575_RS01970 Genome accession   NZ_CP065490
Coordinates   356019..356681 (+) Length   220 a.a.
NCBI ID   WP_100262556.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain CNRZ1575     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 351019..361681
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STCNRZ1575_RS01945 (STCNRZ1575_01960) - 351337..352047 (+) 711 WP_014607989.1 ABC transporter ATP-binding protein -
  STCNRZ1575_RS01950 (STCNRZ1575_01965) - 352183..352843 (+) 661 Protein_319 CBS and ACT domain-containing protein -
  STCNRZ1575_RS01955 (STCNRZ1575_01970) cysK 353010..353936 (-) 927 WP_014607992.1 cysteine synthase A -
  STCNRZ1575_RS01960 (STCNRZ1575_01975) - 354038..354664 (-) 627 WP_011225515.1 YigZ family protein -
  STCNRZ1575_RS01965 (STCNRZ1575_01980) comFA/cflA 354719..356038 (+) 1320 WP_084828509.1 DEAD/DEAH box helicase Machinery gene
  STCNRZ1575_RS01970 (STCNRZ1575_01985) comFC/cflB 356019..356681 (+) 663 WP_100262556.1 ComF family protein Machinery gene
  STCNRZ1575_RS01975 (STCNRZ1575_01990) raiA 356760..357308 (+) 549 WP_095559242.1 ribosome-associated translation inhibitor RaiA -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 26080.41 Da        Isoelectric Point: 8.9833

>NTDB_id=448709 STCNRZ1575_RS01970 WP_100262556.1 356019..356681(+) (comFC/cflB) [Streptococcus thermophilus strain CNRZ1575]
MKCLLCNEWIEPVDQLSDLIMFKQRREYSCEDCKAQFKKLGKARCSNCYKIIDGNSCFDCKIWAKKGYIPKHFAIYRYEE
NMKEYFSRYKFMGDYCLRKIFQQEIKANLKSFLKKGYILVPVPLSEERLEERGFNQVKGLLEGIPYKNIFEKREIEKQSS
RTREERLSQDNSFSLKKGIELPSKIIIIDDIYTTGSTLYQMVKLLDNLDVKEVLTFSLAR

Nucleotide


Download         Length: 663 bp        

>NTDB_id=448709 STCNRZ1575_RS01970 WP_100262556.1 356019..356681(+) (comFC/cflB) [Streptococcus thermophilus strain CNRZ1575]
ATGAAGTGTCTACTATGTAATGAATGGATTGAACCAGTAGATCAATTAAGTGATTTAATTATGTTTAAACAAAGAAGAGA
GTATTCTTGTGAAGATTGTAAAGCTCAATTTAAAAAGCTTGGGAAGGCGAGATGTTCAAATTGTTATAAAATAATAGATG
GAAATAGTTGCTTTGATTGCAAAATTTGGGCGAAAAAAGGCTATATTCCAAAACATTTTGCCATTTATCGTTATGAAGAA
AACATGAAAGAGTATTTTAGTCGCTATAAATTTATGGGAGATTATTGTCTTAGAAAAATATTTCAACAAGAAATTAAAGC
CAATTTAAAGTCTTTTTTAAAGAAAGGTTATATCTTAGTACCTGTCCCCTTGTCGGAAGAACGCCTGGAAGAGAGAGGAT
TCAATCAAGTTAAAGGATTACTAGAGGGAATCCCCTATAAAAACATTTTTGAAAAAAGAGAGATCGAGAAGCAATCCTCG
AGAACACGCGAAGAGCGGTTAAGTCAAGATAATTCTTTCAGTTTGAAGAAAGGTATTGAGCTACCAAGTAAGATCATCAT
AATCGATGATATTTACACAACAGGATCTACCCTGTATCAAATGGTCAAACTATTAGATAATTTAGATGTCAAAGAAGTTT
TGACATTTTCCTTAGCTAGATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus mitis NCTC 12261

45.045

100

0.455
  comFC/cflB Streptococcus mitis SK321

44.595

100

0.45
  comFC/cflB Streptococcus pneumoniae Rx1

43.694

100

0.441
  comFC/cflB Streptococcus pneumoniae D39

43.694

100

0.441
  comFC/cflB Streptococcus pneumoniae R6

43.694

100

0.441
  comFC/cflB Streptococcus pneumoniae TIGR4

43.694

100

0.441