Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HQ611_RS08590 Genome accession   NZ_CP053887
Coordinates   1688137..1688628 (-) Length   163 a.a.
NCBI ID   WP_235082902.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain SS102     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1683137..1693628
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HQ611_RS08575 (HQ611_08530) - 1686043..1686714 (-) 672 WP_000174844.1 DUF1129 domain-containing protein -
  HQ611_RS08580 (HQ611_08535) - 1686739..1687683 (-) 945 WP_000812124.1 magnesium transporter CorA family protein -
  HQ611_RS08585 (HQ611_08540) rpsR 1687853..1688092 (-) 240 WP_000068665.1 30S ribosomal protein S18 -
  HQ611_RS08590 (HQ611_08545) ssb 1688137..1688628 (-) 492 WP_235082902.1 single-stranded DNA-binding protein Machinery gene
  HQ611_RS08595 (HQ611_08550) rpsF 1688640..1688927 (-) 288 WP_001151773.1 30S ribosomal protein S6 -
  HQ611_RS08600 (HQ611_08555) mutY 1689990..1691144 (+) 1155 WP_016480119.1 A/G-specific adenine glycosylase -
  HQ611_RS08605 (HQ611_08560) - 1691321..1691914 (+) 594 WP_000402392.1 helix-turn-helix domain-containing protein -
  HQ611_RS08610 (HQ611_08565) trxA 1691960..1692292 (-) 333 WP_001932060.1 thioredoxin -
  HQ611_RS08615 (HQ611_08570) - 1692355..1692855 (-) 501 WP_000446806.1 phosphatase PAP2 family protein -

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 18145.73 Da        Isoelectric Point: 4.9119

>NTDB_id=448553 HQ611_RS08590 WP_235082902.1 1688137..1688628(-) (ssb) [Streptococcus agalactiae strain SS102]
MINNVVLVGRMTRDAELRYTPSNQAVATFSLAVNRNFKNQSGEREADFINCVIWRQQAENLANWAKKGALVGITGRIQTR
NYENQQGQRVYVTEVVAESFQLLESRATREGGSSNSYNNGGYNNAPSNNSYSASSQQTPNFSRDESPFGNSNSMDISDDD
LPF

Nucleotide


Download         Length: 492 bp        

>NTDB_id=448553 HQ611_RS08590 WP_235082902.1 1688137..1688628(-) (ssb) [Streptococcus agalactiae strain SS102]
ATGATTAATAATGTAGTACTTGTAGGTCGCATGACCCGTGATGCAGAACTTCGTTATACACCAAGTAATCAAGCGGTAGC
CACTTTTTCACTTGCAGTTAATCGTAATTTTAAAAATCAATCTGGCGAACGTGAGGCTGATTTTATTAACTGTGTTATTT
GGCGCCAACAAGCTGAAAACTTGGCTAACTGGGCAAAAAAAGGTGCTTTGGTTGGAATTACAGGTCGTATCCAAACACGT
AATTATGAAAACCAACAAGGTCAACGTGTCTATGTAACAGAAGTTGTTGCGGAAAGTTTCCAATTATTGGAAAGTCGTGC
TACACGAGAAGGTGGTTCATCTAACTCTTATAATAACGGTGGCTATAACAATGCTCCGTCAAATAATAGTTATTCAGCTT
CTTCTCAACAAACGCCTAATTTTAGTCGTGATGAGAGTCCGTTTGGTAACTCAAATTCAATGGATATTTCAGATGATGAT
CTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

60.465

100

0.638
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.714

100

0.62
  ssbB Streptococcus sobrinus strain NIDR 6715-7

55.963

66.871

0.374
  ssbB Bacillus subtilis subsp. subtilis str. 168

56.604

65.031

0.368