NTDB

Overview

Name	pilD	Type	Machinery gene
Locus tag	HQ395_RS04945	Genome accession	NZ_CP053885
Coordinates	1030024..1030896 (-)	Length	290 a.a.
NCBI ID	WP_029302065.1	Uniprot ID	-
Organism	Aeromonas hydrophila strain 3019
Function	assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1025024..1035896

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HQ395_RS04920 (HQ395_04920)	-	1026758..1027942 (+)	1185	WP_029302061.1	tetratricopeptide repeat protein	-
HQ395_RS04925 (HQ395_04925)	mutT	1027951..1028364 (+)	414	WP_174892455.1	8-oxo-dGTP diphosphatase MutT	-
HQ395_RS04930 (HQ395_04930)	yacG	1028425..1028619 (-)	195	WP_029302063.1	DNA gyrase inhibitor YacG	-
HQ395_RS04935 (HQ395_04935)	zapD	1028629..1029351 (-)	723	WP_016352172.1	cell division protein ZapD	-
HQ395_RS04940 (HQ395_04940)	coaE	1029389..1030003 (-)	615	WP_029302064.1	dephospho-CoA kinase	-
HQ395_RS04945 (HQ395_04945)	pilD	1030024..1030896 (-)	873	WP_029302065.1	A24 family peptidase	Machinery gene
HQ395_RS04950 (HQ395_04950)	pilC	1030919..1032160 (-)	1242	WP_029302066.1	type II secretion system F family protein	Machinery gene
HQ395_RS04955 (HQ395_04955)	pilB	1032276..1033982 (-)	1707	WP_029302067.1	PilB family type IVa pilus assembly ATPase TapB	Machinery gene
HQ395_RS04960 (HQ395_04960)	tapA	1033986..1034438 (-)	453	WP_041213796.1	type IVa pilus major pilin TapA	-
HQ395_RS04965 (HQ395_04965)	nadC	1034761..1035618 (-)	858	WP_029302069.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

Download Length: 290 a.a. Molecular weight: 32454.74 Da Isoelectric Point: 6.7410

                                >NTDB_id=448433 HQ395_RS04945 WP_029302065.1 1030024..1030896(-) (pilD) [Aeromonas hydrophila strain 3019]

MLLITDVFHSLPWLYFSLVFLFSLMIGSFLNVVIHRLPIMLEREWQAEYLGYFNPETQPQQEERYNLMVPRSACPHCGHA

ITAMENIPLLSWLWLKGRCRECQAPISARYPLVELLTALLSLVVAATFAPGWGLLAALLLTWVLVALTFIDLDKMLLPDQ

LTLPLLWGGLLFNLAGGFAPLADAVIGAMAGYLVLWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQALPIVLLLSSL

VGAFIGIGLILLRNHHQNKPIPFGPYLAIAGWIALLWGDTITRWYLTTFL

Nucleotide

Download Length: 873 bp

                                >NTDB_id=448433 HQ395_RS04945 WP_029302065.1 1030024..1030896(-) (pilD) [Aeromonas hydrophila strain 3019]

ATGTTGCTGATCACTGACGTTTTTCACAGCCTGCCCTGGCTCTATTTCTCGCTGGTATTCCTCTTTTCTCTGATGATCGG

CAGTTTTCTCAACGTGGTGATCCATCGCCTGCCCATCATGCTGGAGCGGGAGTGGCAGGCCGAATATCTCGGCTATTTCA

ATCCGGAAACACAGCCGCAACAGGAAGAGCGCTACAACCTGATGGTGCCGCGTTCTGCCTGCCCTCATTGCGGCCACGCC

ATCACGGCCATGGAGAACATCCCCCTGCTCAGCTGGCTCTGGCTCAAGGGGCGCTGCCGTGAATGCCAGGCCCCTATCTC

GGCCCGTTATCCTCTGGTGGAGCTGCTGACGGCCCTGCTCTCGCTGGTCGTCGCCGCGACATTCGCACCGGGTTGGGGCT

TGCTGGCCGCCCTGTTGCTCACCTGGGTACTGGTGGCGCTTACTTTCATCGATCTGGACAAGATGCTGCTGCCTGACCAG

CTGACCCTGCCACTGCTGTGGGGCGGCTTGCTGTTCAACCTGGCAGGGGGATTTGCGCCGCTGGCCGATGCGGTGATCGG

CGCCATGGCCGGCTATCTGGTGCTCTGGAGCCTCTACTGGGCCTTCAAGTTGCTGACCGGCAAGGAAGGGATGGGCTATG

GCGACTTCAAGCTGCTGGCGGCGCTGGGCGCCTGGCTCGGCTGGCAGGCACTGCCCATCGTGTTGCTGCTCTCGTCACTG

GTTGGCGCTTTCATCGGAATTGGCCTCATTCTGCTGCGCAACCATCATCAGAACAAACCCATTCCCTTCGGCCCCTATCT

GGCCATCGCCGGCTGGATCGCGCTGCTGTGGGGCGATACCATCACCCGCTGGTACCTCACGACGTTTCTCTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(21-128)

Type IV leader peptidase family (Peptidase_A24)

(139-247)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
pilD	Vibrio cholerae strain A1552	61.324	98.966	0.607
pilD	Vibrio campbellii strain DS40M4	55.944	98.621	0.552
pilD	Acinetobacter baumannii D1279779	54.225	97.931	0.531
pilD	Acinetobacter nosocomialis M2	54.225	97.931	0.531
pilD	Neisseria gonorrhoeae MS11	48.718	94.138	0.459

Detailed information NTG0448433