Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HQ395_RS04300 Genome accession   NZ_CP053885
Coordinates   905977..906555 (-) Length   192 a.a.
NCBI ID   WP_011707639.1    Uniprot ID   A0AAX0XSG5
Organism   Aeromonas hydrophila strain 3019     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 900977..911555
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HQ395_RS04280 (HQ395_04280) - 902457..902669 (-) 213 WP_011707644.1 cold-shock protein -
  HQ395_RS04285 (HQ395_04285) - 903062..903346 (-) 285 WP_024946369.1 DUF3811 domain-containing protein -
  HQ395_RS04290 (HQ395_04290) - 903516..904394 (-) 879 WP_029302577.1 cation diffusion facilitator family transporter -
  HQ395_RS24375 - 904848..904970 (+) 123 WP_080708680.1 hypothetical protein -
  HQ395_RS04295 (HQ395_04295) - 905051..905809 (-) 759 WP_011707640.1 transporter substrate-binding domain-containing protein -
  HQ395_RS04300 (HQ395_04300) ssb 905977..906555 (-) 579 WP_011707639.1 single-stranded DNA-binding protein Machinery gene
  HQ395_RS04305 (HQ395_04305) - 907080..907739 (+) 660 WP_215783796.1 LuxR C-terminal-related transcriptional regulator -
  HQ395_RS04310 (HQ395_04310) uvrA 907835..910663 (+) 2829 WP_029302578.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 21161.56 Da        Isoelectric Point: 5.9247

>NTDB_id=448432 HQ395_RS04300 WP_011707639.1 905977..906555(-) (ssb) [Aeromonas hydrophila strain 3019]
MASRGINKVILIGNLGQDPEVRYMPSGGAVTNITLATSDTWRDKQTGEQKERTEWHRVVFMGKLAEVAGEYLKKGSQVYV
EGKLQTRKWQDQSGQERYTTEVLVDGFSGVMQMLGGRPQGGAGQGMGGQSQGNWGQQQGMQSQQPMNQARPAQAPQQNMQ
QQGGYARPAQQPQSAPPVYNEPPMDFDDDIPF

Nucleotide


Download         Length: 579 bp        

>NTDB_id=448432 HQ395_RS04300 WP_011707639.1 905977..906555(-) (ssb) [Aeromonas hydrophila strain 3019]
ATGGCCAGTCGAGGCATCAATAAAGTCATTCTGATCGGTAACCTGGGGCAAGACCCGGAAGTGCGCTACATGCCGAGCGG
CGGTGCCGTGACCAACATCACCCTGGCCACCTCCGACACCTGGCGTGACAAGCAGACCGGTGAGCAGAAAGAGCGTACCG
AGTGGCACCGCGTTGTCTTCATGGGCAAGCTGGCTGAAGTGGCTGGCGAGTACCTGAAGAAAGGCTCCCAAGTCTATGTT
GAAGGCAAGCTGCAGACCCGCAAGTGGCAGGATCAAAGCGGCCAGGAGCGTTACACCACCGAAGTGCTGGTCGATGGCTT
CAGCGGCGTGATGCAGATGCTGGGTGGCCGTCCGCAAGGCGGCGCCGGCCAGGGCATGGGTGGCCAGTCTCAGGGCAACT
GGGGTCAGCAGCAGGGCATGCAGTCCCAGCAGCCGATGAACCAGGCGCGTCCTGCCCAGGCTCCGCAGCAGAACATGCAG
CAACAGGGCGGCTACGCTCGTCCGGCCCAGCAGCCGCAGTCTGCACCGCCGGTGTACAATGAGCCGCCGATGGACTTCGA
CGACGACATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

66.497

100

0.682
  ssb Glaesserella parasuis strain SC1401

53.684

98.958

0.531
  ssb Neisseria meningitidis MC58

47.917

100

0.479
  ssb Neisseria gonorrhoeae MS11

47.895

98.958

0.474