NTDB

Overview

Name	pilD	Type	Machinery gene
Locus tag	HQ397_RS20295	Genome accession	NZ_CP053883
Coordinates	4396221..4397093 (-)	Length	290 a.a.
NCBI ID	WP_252376354.1	Uniprot ID	-
Organism	Aeromonas hydrophila strain 4960
Function	assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4391221..4402093

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HQ397_RS22705 (HQ397_20190)	-	4392957..4394140 (+)	1184	Protein_3930	tetratricopeptide repeat protein	-
HQ397_RS20275 (HQ397_20195)	mutT	4394149..4394562 (+)	414	WP_016352173.1	8-oxo-dGTP diphosphatase MutT	-
HQ397_RS20280 (HQ397_20200)	yacG	4394623..4394817 (-)	195	WP_005305661.1	DNA gyrase inhibitor YacG	-
HQ397_RS20285 (HQ397_20205)	zapD	4394827..4395549 (-)	723	WP_016352172.1	cell division protein ZapD	-
HQ397_RS20290 (HQ397_20210)	coaE	4395587..4396201 (-)	615	WP_016352171.1	dephospho-CoA kinase	-
HQ397_RS20295 (HQ397_20215)	pilD	4396221..4397093 (-)	873	WP_252376354.1	A24 family peptidase	Machinery gene
HQ397_RS20300 (HQ397_20220)	pilC	4397116..4398357 (-)	1242	WP_252376355.1	type II secretion system F family protein	Machinery gene
HQ397_RS20305 (HQ397_20225)	pilB	4398473..4400179 (-)	1707	WP_029302067.1	PilB family type IVa pilus assembly ATPase TapB	Machinery gene
HQ397_RS20310 (HQ397_20230)	tapA	4400183..4400635 (-)	453	WP_252376356.1	type IVa pilus major pilin TapA	-
HQ397_RS20315 (HQ397_20235)	nadC	4400958..4401815 (-)	858	WP_252376357.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

Download Length: 290 a.a. Molecular weight: 32359.69 Da Isoelectric Point: 6.7410

                                >NTDB_id=448419 HQ397_RS20295 WP_252376354.1 4396221..4397093(-) (pilD) [Aeromonas hydrophila strain 4960]

MLLITDVFHSLPWLYFSLVFLFSLMIGSFLNVVIHRLPIMLEREWQAEYLGYFNPETQPQPEERYNLMVPRSACPHCGHA

ITAMENIPLLSWLWLKGRCRECQAPISARYPLVELLTALLSLVVAATLAPGWGLLAALLLTWVLVALTFIDLDKMLLPDQ

LTLPLLWGGLLFNLAGGFAPLADAVIGAMAGYLVLWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQALPIVLLLSSL

VGAFIGIGLILLRNHHQNKPIPFGPYLAIAGWIALLWGDTITRWYLATFL

Nucleotide

Download Length: 873 bp

                                >NTDB_id=448419 HQ397_RS20295 WP_252376354.1 4396221..4397093(-) (pilD) [Aeromonas hydrophila strain 4960]

ATGTTGCTGATCACTGACGTTTTTCACAGCCTGCCCTGGCTCTATTTCTCGCTGGTATTCCTCTTTTCTCTGATGATCGG

CAGTTTTCTCAACGTGGTGATCCATCGCCTGCCCATCATGCTGGAGCGGGAGTGGCAGGCCGAATATCTCGGCTATTTCA

ATCCGGAAACACAGCCGCAGCCGGAAGAGCGCTACAACCTGATGGTGCCGCGTTCTGCCTGCCCTCATTGCGGCCACGCC

ATCACGGCCATGGAGAACATCCCCCTGCTCAGTTGGCTCTGGCTCAAGGGGCGCTGCCGTGAATGCCAGGCCCCTATCTC

GGCCCGTTATCCTCTGGTGGAGCTGCTGACGGCACTGCTCTCGCTGGTCGTCGCCGCGACATTAGCACCGGGCTGGGGCT

TGCTGGCCGCCCTGTTGCTCACCTGGGTACTGGTGGCGCTCACTTTCATCGATCTGGACAAAATGCTGCTGCCGGATCAG

CTGACCCTGCCACTGCTGTGGGGCGGCCTGCTGTTCAACCTAGCAGGGGGATTTGCGCCGCTGGCCGATGCGGTGATCGG

CGCCATGGCCGGCTATCTGGTGCTCTGGAGCCTCTACTGGGCCTTCAAGTTGCTGACCGGCAAGGAAGGGATGGGGTATG

GCGACTTCAAGCTGCTGGCGGCGCTGGGCGCCTGGCTCGGCTGGCAGGCACTGCCCATAGTGTTGCTGCTCTCGTCGCTG

GTTGGCGCTTTCATCGGTATTGGTCTCATTCTGCTGCGCAATCATCATCAGAACAAACCCATCCCCTTCGGCCCCTATCT

GGCCATCGCCGGCTGGATCGCGCTGCTGTGGGGCGATACCATCACCCGCTGGTACCTCGCGACGTTTCTCTGA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(139-247)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(21-126)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
pilD	Vibrio cholerae strain A1552	60.976	98.966	0.603
pilD	Vibrio campbellii strain DS40M4	55.594	98.621	0.548
pilD	Acinetobacter baumannii D1279779	53.684	98.276	0.528
pilD	Acinetobacter nosocomialis M2	53.684	98.276	0.528
pilD	Neisseria gonorrhoeae MS11	48.872	91.724	0.448

Detailed information NTG0448419