Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HQ397_RS19640 Genome accession   NZ_CP053883
Coordinates   4272931..4273509 (-) Length   192 a.a.
NCBI ID   WP_252376316.1    Uniprot ID   -
Organism   Aeromonas hydrophila strain 4960     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4267931..4278509
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HQ397_RS19620 (HQ397_19550) - 4269424..4269636 (-) 213 WP_252376313.1 cold-shock protein -
  HQ397_RS19625 (HQ397_19555) - 4270036..4270320 (-) 285 WP_024946369.1 DUF3811 domain-containing protein -
  HQ397_RS19630 (HQ397_19560) - 4270470..4271348 (-) 879 WP_252376314.1 cation diffusion facilitator family transporter -
  HQ397_RS22625 - 4271799..4271924 (+) 126 WP_257721615.1 hypothetical protein -
  HQ397_RS19635 (HQ397_19565) - 4272005..4272763 (-) 759 WP_252376315.1 transporter substrate-binding domain-containing protein -
  HQ397_RS19640 (HQ397_19570) ssb 4272931..4273509 (-) 579 WP_252376316.1 single-stranded DNA-binding protein Machinery gene
  HQ397_RS19645 (HQ397_19575) - 4274036..4274695 (+) 660 WP_011707638.1 LuxR C-terminal-related transcriptional regulator -
  HQ397_RS19650 (HQ397_19580) uvrA 4274791..4277619 (+) 2829 WP_135318851.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 21191.59 Da        Isoelectric Point: 5.9247

>NTDB_id=448418 HQ397_RS19640 WP_252376316.1 4272931..4273509(-) (ssb) [Aeromonas hydrophila strain 4960]
MASRGINKVILIGNLGQDPEVRYMPSGGAVTNITLATSDTWRDKQTGEQKERTEWHRVVFMGKLAEVAGEYLKKGSQVYV
EGKLQTRKWQDQSGQERYTTEVLVDGFSGVMQMLGGRPQGGAGQGMGGQSQGNWGQQQSMQSQQPMNQARPAQAPQQNMQ
QQGGYARPAQQPQSAPPVYNEPPMDFDDDIPF

Nucleotide


Download         Length: 579 bp        

>NTDB_id=448418 HQ397_RS19640 WP_252376316.1 4272931..4273509(-) (ssb) [Aeromonas hydrophila strain 4960]
ATGGCCAGTCGAGGCATCAATAAAGTCATTCTGATCGGTAACCTGGGACAAGACCCGGAAGTGCGCTACATGCCGAGCGG
CGGTGCCGTGACCAATATCACCCTGGCCACCTCCGACACCTGGCGCGACAAGCAGACCGGTGAGCAGAAAGAGCGTACCG
AGTGGCACCGCGTTGTCTTCATGGGCAAGCTGGCCGAAGTGGCTGGCGAGTACCTGAAGAAAGGTTCCCAAGTCTATGTT
GAAGGCAAGCTGCAGACCCGCAAGTGGCAGGATCAAAGCGGCCAGGAGCGTTACACCACCGAAGTGCTGGTCGATGGCTT
CAGCGGCGTGATGCAGATGCTGGGTGGCCGTCCGCAAGGCGGTGCCGGCCAGGGCATGGGTGGCCAGTCTCAGGGCAACT
GGGGTCAGCAGCAGAGCATGCAGTCCCAGCAGCCGATGAACCAGGCGCGTCCTGCCCAGGCTCCGCAGCAGAACATGCAG
CAACAGGGCGGCTATGCTCGTCCGGCCCAGCAGCCACAGTCTGCACCGCCGGTGTACAATGAGCCGCCGATGGACTTCGA
CGACGACATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

66.497

100

0.682
  ssb Glaesserella parasuis strain SC1401

53.684

98.958

0.531
  ssb Neisseria meningitidis MC58

47.917

100

0.479
  ssb Neisseria gonorrhoeae MS11

47.895

98.958

0.474