Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HQ398_RS20330 Genome accession   NZ_CP053882
Coordinates   4323496..4324074 (-) Length   192 a.a.
NCBI ID   WP_033116044.1    Uniprot ID   A0AAQ0J003
Organism   Aeromonas jandaei strain 3036     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4318496..4329074
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HQ398_RS20310 (HQ398_20280) - 4319002..4320360 (-) 1359 WP_042032197.1 NCS2 family permease -
  HQ398_RS20315 (HQ398_20285) - 4320633..4320842 (-) 210 WP_156854046.1 cold-shock protein -
  HQ398_RS20320 (HQ398_20290) yjbD 4321346..4321630 (-) 285 WP_042032196.1 DUF3811 domain-containing protein -
  HQ398_RS20325 (HQ398_20295) - 4321774..4322676 (-) 903 WP_071914191.1 cation diffusion facilitator family transporter -
  HQ398_RS21920 - 4323147..4323269 (+) 123 WP_005306071.1 hypothetical protein -
  HQ398_RS20330 (HQ398_20300) ssb 4323496..4324074 (-) 579 WP_033116044.1 single-stranded DNA-binding protein Machinery gene
  HQ398_RS20335 (HQ398_20305) uvrA 4324445..4327273 (+) 2829 WP_215806786.1 excinuclease ABC subunit UvrA -
  HQ398_RS20340 (HQ398_20310) - 4327385..4329058 (+) 1674 WP_215806788.1 diguanylate cyclase -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 21259.77 Da        Isoelectric Point: 5.9301

>NTDB_id=448397 HQ398_RS20330 WP_033116044.1 4323496..4324074(-) (ssb) [Aeromonas jandaei strain 3036]
MASRGINKVILIGNLGQDPEVRYMPSGGAVTNITLATSETWRDKQTGEQKERTEWHRVVFMGKLAEVAGEYLKKGSQVYV
EGKLQTRKWQDQSGQERYTTEVLVDSFTGVMQMLGGRPQGGQGMGQNMGGQQGGWGQPQQAMQQPMNQQRPAAAPQQNMQ
QQGGYGRPAQQPQSAPPVYNEPPMDFDDDIPF

Nucleotide


Download         Length: 579 bp        

>NTDB_id=448397 HQ398_RS20330 WP_033116044.1 4323496..4324074(-) (ssb) [Aeromonas jandaei strain 3036]
ATGGCCAGTCGAGGCATCAATAAAGTCATTCTGATCGGTAACCTCGGGCAAGACCCGGAAGTACGCTACATGCCGAGTGG
CGGTGCTGTGACCAACATTACTCTGGCCACCTCTGAAACCTGGCGCGACAAGCAGACCGGTGAGCAGAAAGAGCGCACCG
AGTGGCACCGCGTCGTCTTCATGGGCAAGCTGGCTGAAGTGGCTGGCGAGTACCTGAAAAAGGGCTCCCAGGTCTATGTC
GAAGGCAAACTACAGACTCGCAAGTGGCAGGATCAGAGTGGCCAGGAGCGCTACACCACTGAAGTGCTGGTCGACAGCTT
TACCGGCGTCATGCAGATGCTGGGTGGCCGTCCGCAAGGCGGTCAGGGCATGGGCCAGAACATGGGTGGCCAGCAAGGTG
GCTGGGGTCAACCGCAGCAAGCCATGCAGCAGCCGATGAACCAGCAGCGTCCGGCCGCCGCCCCGCAGCAAAACATGCAG
CAGCAGGGTGGCTACGGCCGTCCGGCCCAGCAGCCCCAGTCTGCCCCGCCGGTCTACAACGAGCCGCCGATGGATTTCGA
CGACGACATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

69.192

100

0.714
  ssb Glaesserella parasuis strain SC1401

54.974

99.479

0.547
  ssb Neisseria gonorrhoeae MS11

47.619

98.438

0.469
  ssb Neisseria meningitidis MC58

47.09

98.438

0.464