Detailed information    

insolico Bioinformatically predicted

Overview

Name   cclA/cilC   Type   Machinery gene
Locus tag   STR1_RS03655 Genome accession   NZ_CP065486
Coordinates   700211..700855 (-) Length   214 a.a.
NCBI ID   WP_095559316.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain R1     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 695211..705855
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STR1_RS03635 (STR1_03630) holA 695532..696566 (+) 1035 WP_002946639.1 DNA polymerase III subunit delta -
  STR1_RS03640 (STR1_03635) sodA 696662..697267 (+) 606 WP_011680996.1 superoxide dismutase SodA -
  STR1_RS03645 (STR1_03640) - 697364..698743 (+) 1380 WP_095559315.1 serine hydrolase -
  STR1_RS03650 (STR1_03645) - 698839..700095 (-) 1257 WP_198362548.1 ISL3-like element ISSth1 family transposase -
  STR1_RS03655 (STR1_03650) cclA/cilC 700211..700855 (-) 645 WP_095559316.1 A24 family peptidase Machinery gene
  STR1_RS03660 (STR1_03655) - 700964..701485 (+) 522 WP_014608172.1 Dps family protein -
  STR1_RS03665 (STR1_03660) - 701574..702011 (+) 438 WP_011227072.1 Fur family transcriptional regulator -
  STR1_RS03670 (STR1_03665) - 702122..702328 (+) 207 WP_002950395.1 YqgQ family protein -
  STR1_RS03675 (STR1_03670) - 702321..703289 (+) 969 WP_011225772.1 ROK family glucokinase -
  STR1_RS03680 (STR1_03675) typA 703427..705277 (+) 1851 WP_014608174.1 translational GTPase TypA -
  STR1_RS03685 (STR1_03680) - 705297..705569 (+) 273 WP_002950398.1 DUF3165 family protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24672.75 Da        Isoelectric Point: 8.5469

>NTDB_id=448310 STR1_RS03655 WP_095559316.1 700211..700855(-) (cclA/cilC) [Streptococcus thermophilus strain R1]
MLSILYFFLGTSLGSFIGLICDRFPEKSIIFPRSHCNQCGHPLRFFEMIPILSQLFLRFKCRLCQSSIPYRYLFLELFCG
GILLLYFYNYLDFGRTYLLFFSLCLTIFDLKNKSYPLLIWILGTLPLLCLGNHYLTFSLGISLAVLSYIKRLNIGEGDFL
YLASVSLIFPFSKILIAIELACSFGLMYFLVRKNPNETVAFVPFLFISVLILAL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=448310 STR1_RS03655 WP_095559316.1 700211..700855(-) (cclA/cilC) [Streptococcus thermophilus strain R1]
ATGCTTAGTATTTTATATTTTTTTCTTGGTACCTCTTTAGGCTCGTTTATTGGATTGATTTGTGATCGTTTTCCTGAGAA
GTCGATTATTTTTCCTAGAAGCCATTGCAATCAGTGTGGGCATCCGTTACGTTTTTTCGAAATGATTCCGATCCTATCAC
AACTTTTCTTAAGGTTCAAATGTCGGTTATGTCAAAGCTCTATCCCATACCGTTATCTCTTCTTGGAATTGTTTTGTGGA
GGAATACTTCTTCTTTATTTCTATAACTACCTAGATTTTGGAAGAACCTATTTGCTTTTTTTCAGTCTTTGTCTAACTAT
TTTTGATTTAAAAAATAAATCATATCCCCTTCTAATTTGGATTCTTGGAACACTACCTCTCCTATGTTTGGGAAACCACT
ACCTCACTTTTAGCTTAGGAATAAGTTTAGCCGTTCTGTCATATATCAAACGTTTAAATATTGGTGAAGGTGATTTTCTC
TATTTGGCCAGTGTCTCCCTCATTTTCCCATTTTCCAAAATACTAATAGCTATTGAACTAGCTTGCTCATTTGGGCTTAT
GTACTTCCTAGTACGTAAAAACCCTAATGAAACAGTCGCTTTTGTCCCATTTCTCTTTATTAGTGTTCTAATTCTGGCTC
TATAA

Domains

Predicted by InterProScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(9-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cclA/cilC Streptococcus mitis SK321

39.623

99.065

0.393
  cclA/cilC Streptococcus pneumoniae TIGR4

40.191

97.664

0.393
  cclA/cilC Streptococcus mitis NCTC 12261

39.151

99.065

0.388
  cclA/cilC Streptococcus pneumoniae Rx1

38.679

99.065

0.383
  cclA/cilC Streptococcus pneumoniae D39

38.679

99.065

0.383
  cclA/cilC Streptococcus pneumoniae R6

38.679

99.065

0.383