Detailed information    

insolico Bioinformatically predicted

Overview

Name   cclA/cilC   Type   Machinery gene
Locus tag   STMM20_RS06385 Genome accession   NZ_CP065485
Coordinates   1251452..1252099 (+) Length   215 a.a.
NCBI ID   WP_014608171.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain MM20     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1246452..1257099
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STMM20_RS06350 (STMM20_06380) - 1247125..1248093 (-) 969 WP_220018394.1 ROK family glucokinase -
  STMM20_RS06355 (STMM20_06385) - 1248086..1248292 (-) 207 WP_022096801.1 YqgQ family protein -
  STMM20_RS06360 (STMM20_06390) - 1248403..1248840 (-) 438 WP_141326303.1 Fur family transcriptional regulator -
  STMM20_RS06365 (STMM20_06395) - 1248929..1249450 (-) 522 WP_014608172.1 Dps family protein -
  STMM20_RS06370 (STMM20_06400) cclA/cilC 1249559..1250206 (+) 648 WP_014608171.1 A24 family peptidase Machinery gene
  STMM20_RS06375 (STMM20_06405) - 1250247..1250807 (-) 561 Protein_1224 serine hydrolase -
  STMM20_RS06380 (STMM20_06410) - 1250822..1251343 (-) 522 WP_011680999.1 Dps family protein -
  STMM20_RS06385 (STMM20_06415) cclA/cilC 1251452..1252099 (+) 648 WP_014608171.1 A24 family peptidase Machinery gene
  STMM20_RS06390 (STMM20_06420) - 1252140..1253519 (-) 1380 WP_347103491.1 serine hydrolase -
  STMM20_RS06395 (STMM20_06425) - 1253708..1254957 (+) 1250 Protein_1228 ISL3 family transposase -
  STMM20_RS06400 (STMM20_06430) sodA 1255012..1255617 (-) 606 WP_011680996.1 superoxide dismutase SodA -
  STMM20_RS06405 (STMM20_06435) holA 1255713..1256747 (-) 1035 WP_014608169.1 DNA polymerase III subunit delta -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 24867.98 Da        Isoelectric Point: 8.5469

>NTDB_id=448235 STMM20_RS06385 WP_014608171.1 1251452..1252099(+) (cclA/cilC) [Streptococcus thermophilus strain MM20]
MLSILYFFLGTSLGSFIGLICDRFPEKSIIFPRSHCNQCGHPLRFFEMIPILSQLFLRFKCRLCQSSIPYRYLFLELFCG
GILLLYFYNYLDFGRTYLLFFSLCLTIFDLKNKSYPLLIWILGTLPLLCLGNHYLTFSLGISLAVLSYIKRLNIGEGDFL
YLASVSLIFPFSKILIAIELACSFGLMYFLVRKNPNETVAFVPFLFISVLILTFM

Nucleotide


Download         Length: 648 bp        

>NTDB_id=448235 STMM20_RS06385 WP_014608171.1 1251452..1252099(+) (cclA/cilC) [Streptococcus thermophilus strain MM20]
ATGCTTAGTATTTTATATTTTTTTCTTGGTACCTCTTTAGGCTCGTTTATTGGATTGATTTGTGATCGTTTTCCTGAGAA
GTCGATTATTTTTCCTAGAAGCCATTGCAATCAGTGTGGGCATCCGTTACGTTTTTTCGAAATGATTCCGATCCTATCAC
AACTTTTCTTAAGGTTCAAATGTCGGTTATGTCAAAGCTCTATCCCATACCGTTATCTCTTCTTGGAATTGTTTTGTGGA
GGAATACTTCTTCTTTATTTCTATAACTACCTAGATTTTGGAAGAACCTATTTGCTTTTTTTCAGTCTTTGTCTAACTAT
TTTTGATTTAAAAAATAAATCATATCCCCTTCTAATTTGGATTCTTGGAACACTACCTCTCCTATGTTTGGGAAACCACT
ACCTCACTTTTAGCTTAGGAATAAGTTTAGCCGTTCTGTCATATATCAAACGTTTAAATATTGGTGAAGGTGATTTTCTC
TATTTGGCCAGTGTCTCCCTCATTTTCCCATTTTCCAAAATACTAATAGCTATTGAACTAGCTTGCTCATTTGGGCTTAT
GTACTTCCTAGTACGTAAAAACCCTAATGAAACAGTCGCTTTTGTCCCATTTCTCTTTATTAGTGTTCTAATTCTTACCT
TCATGTAA

Domains

Predicted by InterProScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(9-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cclA/cilC Streptococcus mitis SK321

39.72

99.535

0.395
  cclA/cilC Streptococcus pneumoniae TIGR4

39.72

99.535

0.395
  cclA/cilC Streptococcus mitis NCTC 12261

39.252

99.535

0.391
  cclA/cilC Streptococcus pneumoniae Rx1

38.785

99.535

0.386
  cclA/cilC Streptococcus pneumoniae D39

38.785

99.535

0.386
  cclA/cilC Streptococcus pneumoniae R6

38.785

99.535

0.386