Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HPY99_RS04470 Genome accession   NZ_CP053855
Coordinates   948283..948819 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A9P2PPK2
Organism   Escherichia coli strain 258E     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 943283..953819
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPY99_RS04450 (HPY99_04425) soxR 945011..945475 (-) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -
  HPY99_RS04455 (HPY99_04430) soxS 945561..945884 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  HPY99_RS04460 (HPY99_04435) pdeC 945887..947473 (-) 1587 WP_124783439.1 c-di-GMP phosphodiesterase PdeC -
  HPY99_RS04465 (HPY99_04440) yjcB 947903..948184 (+) 282 WP_001295689.1 YjcB family protein -
  HPY99_RS04470 (HPY99_04445) ssb 948283..948819 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  HPY99_RS04475 (HPY99_04450) uvrA 949073..951895 (+) 2823 WP_000357740.1 excinuclease ABC subunit UvrA -
  HPY99_RS04480 (HPY99_04455) yjbR 951930..952286 (-) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  HPY99_RS04485 (HPY99_04460) yjbQ 952290..952706 (-) 417 WP_000270383.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  HPY99_RS04490 (HPY99_04465) aphA 952817..953530 (-) 714 WP_001317548.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=448220 HPY99_RS04470 WP_000168305.1 948283..948819(-) (ssb) [Escherichia coli strain 258E]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=448220 HPY99_RS04470 WP_000168305.1 948283..948819(-) (ssb) [Escherichia coli strain 258E]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCGAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCACAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489