Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HPM96_RS00390 Genome accession   NZ_CP053852
Coordinates   80730..81266 (+) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A9P2PPK2
Organism   Escherichia coli strain CE1628     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 75730..86266
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPM96_RS00370 (HPM96_00370) aphA 76018..76731 (+) 714 WP_001226928.1 acid phosphatase AphA -
  HPM96_RS00375 (HPM96_00375) yjbQ 76842..77258 (+) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  HPM96_RS00380 (HPM96_00380) yjbR 77262..77618 (+) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  HPM96_RS00385 (HPM96_00385) uvrA 77653..80475 (-) 2823 WP_000357740.1 excinuclease ABC subunit UvrA -
  HPM96_RS00390 (HPM96_00390) ssb 80730..81266 (+) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  HPM96_RS00395 (HPM96_00395) yjcB 81365..81646 (-) 282 WP_001295689.1 YjcB family protein -
  HPM96_RS00400 (HPM96_00400) pdeC 82076..83662 (+) 1587 WP_000019512.1 c-di-GMP phosphodiesterase PdeC -
  HPM96_RS00405 (HPM96_00405) soxS 83665..83988 (-) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  HPM96_RS00410 (HPM96_00410) soxR 84074..84538 (+) 465 WP_000412436.1 redox-sensitive transcriptional activator SoxR -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=448190 HPM96_RS00390 WP_000168305.1 80730..81266(+) (ssb) [Escherichia coli strain CE1628]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=448190 HPM96_RS00390 WP_000168305.1 80730..81266(+) (ssb) [Escherichia coli strain CE1628]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGACAAAGCGACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTAGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGCAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGTTGGGTGGTCGTCAGGGTGGTGGCGCTCCTGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489