Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | HPM97_RS07150 | Genome accession | NZ_CP053851 |
| Coordinates | 1509392..1509928 (-) | Length | 178 a.a. |
| NCBI ID | WP_000168305.1 | Uniprot ID | A0A9P2PPK2 |
| Organism | Escherichia coli strain CE1803A | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1509392..1571733 | 1509392..1509928 | within | 0 |
Gene organization within MGE regions
Location: 1509392..1571733
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HPM97_RS07150 (HPM97_07150) | ssb | 1509392..1509928 (-) | 537 | WP_000168305.1 | single-stranded DNA-binding protein SSB1 | Machinery gene |
| HPM97_RS07155 (HPM97_07155) | uvrA | 1510183..1513005 (+) | 2823 | WP_000357740.1 | excinuclease ABC subunit UvrA | - |
| HPM97_RS07160 (HPM97_07160) | yjbR | 1513040..1513396 (-) | 357 | WP_000155657.1 | MmcQ/YjbR family DNA-binding protein | - |
| HPM97_RS07165 (HPM97_07165) | yjbQ | 1513400..1513816 (-) | 417 | WP_000270375.1 | secondary thiamine-phosphate synthase enzyme YjbQ | - |
| HPM97_RS07170 (HPM97_07170) | aphA | 1513927..1514640 (-) | 714 | WP_001226928.1 | acid phosphatase AphA | - |
| HPM97_RS23185 | - | 1515041..1515263 (+) | 223 | Protein_1423 | hypothetical protein | - |
| HPM97_RS07180 (HPM97_07180) | tyrB | 1515767..1516960 (-) | 1194 | WP_000486954.1 | aromatic amino acid transaminase | - |
| HPM97_RS07185 (HPM97_07185) | alr | 1517213..1518292 (-) | 1080 | WP_001147328.1 | alanine racemase | - |
| HPM97_RS07190 (HPM97_07190) | dnaB | 1518345..1519760 (-) | 1416 | WP_000918363.1 | replicative DNA helicase | - |
| HPM97_RS07195 (HPM97_07195) | qorA | 1519843..1520826 (+) | 984 | WP_001600849.1 | quinone oxidoreductase | - |
| HPM97_RS07200 (HPM97_07200) | pspG | 1520992..1521234 (-) | 243 | WP_000891408.1 | envelope stress response protein PspG | - |
| HPM97_RS07205 (HPM97_07205) | dusA | 1521368..1522405 (-) | 1038 | WP_012602639.1 | tRNA dihydrouridine(20/20a) synthase DusA | - |
| HPM97_RS07210 (HPM97_07210) | - | 1522767..1523771 (-) | 1005 | WP_022646425.1 | DUF2713 family protein | - |
| HPM97_RS07215 (HPM97_07215) | zur | 1524089..1524604 (+) | 516 | WP_000416263.1 | zinc uptake transcriptional repressor Zur | - |
| HPM97_RS07220 (HPM97_07220) | yjbJ | 1524646..1524855 (-) | 210 | WP_001296638.1 | CsbD family protein | - |
| HPM97_RS07225 (HPM97_07225) | dinF | 1524971..1526296 (-) | 1326 | WP_001562441.1 | MATE family efflux transporter DinF | - |
| HPM97_RS07230 (HPM97_07230) | lexA | 1526369..1526977 (-) | 609 | WP_063628471.1 | transcriptional repressor LexA | - |
| HPM97_RS07235 (HPM97_07235) | dgkA | 1527087..1527455 (-) | 369 | WP_000002907.1 | diacylglycerol kinase | - |
| HPM97_RS07240 (HPM97_07240) | plsB | 1527626..1530049 (+) | 2424 | WP_000017354.1 | glycerol-3-phosphate 1-O-acyltransferase PlsB | - |
| HPM97_RS07245 (HPM97_07245) | ubiA | 1530204..1531076 (-) | 873 | WP_000455227.1 | 4-hydroxybenzoate octaprenyltransferase | - |
| HPM97_RS07250 (HPM97_07250) | ubiC | 1531089..1531586 (-) | 498 | WP_001308201.1 | chorismate lyase | - |
| HPM97_RS07255 (HPM97_07255) | - | 1531809..1533389 (-) | 1581 | WP_061092770.1 | SopA family protein | - |
| HPM97_RS07260 (HPM97_07260) | malM | 1533617..1534537 (-) | 921 | WP_001361468.1 | maltose operon protein MalM | - |
| HPM97_RS07265 (HPM97_07265) | lamB | 1534780..1536120 (-) | 1341 | WP_000973665.1 | maltoporin LamB | - |
| HPM97_RS07270 (HPM97_07270) | malK | 1536192..1537307 (-) | 1116 | WP_000179165.1 | maltose/maltodextrin ABC transporter ATP-binding protein MalK | - |
| HPM97_RS07275 (HPM97_07275) | malE | 1537672..1538862 (+) | 1191 | WP_000695387.1 | maltose/maltodextrin ABC transporter substrate-binding protein MalE | - |
| HPM97_RS07280 (HPM97_07280) | malF | 1539016..1540560 (+) | 1545 | WP_001361466.1 | maltose ABC transporter permease MalF | - |
| HPM97_RS07285 (HPM97_07285) | malG | 1540575..1541465 (+) | 891 | WP_001252058.1 | maltose ABC transporter permease MalG | - |
| HPM97_RS07290 (HPM97_07290) | psiE | 1541559..1541969 (-) | 411 | WP_000202902.1 | phosphate-starvation-inducible protein PsiE | - |
| HPM97_RS07295 (HPM97_07295) | - | 1542184..1542462 (+) | 279 | WP_001328330.1 | hypothetical protein | - |
| HPM97_RS07300 (HPM97_07300) | yjbH | 1542509..1544605 (-) | 2097 | WP_000745730.1 | YjbH domain-containing protein | - |
| HPM97_RS07305 (HPM97_07305) | yjbG | 1544605..1545342 (-) | 738 | WP_000595548.1 | capsule biosynthesis GfcC family protein | - |
| HPM97_RS07310 (HPM97_07310) | yjbF | 1545339..1545977 (-) | 639 | WP_001361463.1 | YjbF family lipoprotein | - |
| HPM97_RS07315 (HPM97_07315) | yjbE | 1546091..1546333 (-) | 243 | WP_000757333.1 | exopolysaccharide production protein YjbE | - |
| HPM97_RS07320 (HPM97_07320) | pgi | 1546687..1548336 (-) | 1650 | WP_000789981.1 | glucose-6-phosphate isomerase | - |
| HPM97_RS07325 (HPM97_07325) | lysC | 1548861..1550210 (+) | 1350 | WP_001290321.1 | lysine-sensitive aspartokinase 3 | - |
| HPM97_RS07330 (HPM97_07330) | - | 1550265..1550612 (-) | 348 | WP_000619864.1 | Mor transcription activator family protein | - |
| HPM97_RS07335 (HPM97_07335) | - | 1551150..1551437 (+) | 288 | WP_000758131.1 | putative holin | - |
| HPM97_RS07340 (HPM97_07340) | - | 1551440..1552045 (+) | 606 | WP_000266448.1 | lytic transglycosylase domain-containing protein | - |
| HPM97_RS07345 (HPM97_07345) | - | 1552058..1552372 (+) | 315 | WP_000777272.1 | membrane protein | - |
| HPM97_RS07350 (HPM97_07350) | - | 1552517..1552972 (+) | 456 | WP_000404767.1 | Gp37 family protein | - |
| HPM97_RS07355 (HPM97_07355) | - | 1552969..1553166 (+) | 198 | WP_000875310.1 | hypothetical protein | - |
| HPM97_RS07360 (HPM97_07360) | - | 1553156..1554580 (+) | 1425 | WP_000729835.1 | phage tail sheath family protein | - |
| HPM97_RS07365 (HPM97_07365) | - | 1554580..1555104 (+) | 525 | WP_000907502.1 | phage major tail tube protein | - |
| HPM97_RS07370 (HPM97_07370) | - | 1555155..1555472 (+) | 318 | WP_000658214.1 | phage tail assembly protein | - |
| HPM97_RS23395 (HPM97_07375) | - | 1555432..1555560 (+) | 129 | WP_015674804.1 | GpE family phage tail protein | - |
| HPM97_RS07380 (HPM97_07380) | - | 1555662..1558037 (+) | 2376 | WP_001262479.1 | phage tail tape measure protein | - |
| HPM97_RS07385 (HPM97_07385) | - | 1558037..1558990 (+) | 954 | WP_000271436.1 | phage tail protein | - |
| HPM97_RS07390 (HPM97_07390) | - | 1558990..1559199 (+) | 210 | WP_001269711.1 | tail protein X | - |
| HPM97_RS07395 (HPM97_07395) | - | 1559187..1560227 (+) | 1041 | WP_001361462.1 | contractile injection system protein, VgrG/Pvc8 family | - |
| HPM97_RS07400 (HPM97_07400) | - | 1560237..1560938 (+) | 702 | WP_000679401.1 | phage baseplate assembly protein V | - |
| HPM97_RS07405 (HPM97_07405) | - | 1561037..1561396 (+) | 360 | WP_001093498.1 | GPW/gp25 family protein | - |
| HPM97_RS07410 (HPM97_07410) | - | 1561387..1562502 (+) | 1116 | WP_000951744.1 | baseplate J/gp47 family protein | - |
| HPM97_RS07415 (HPM97_07415) | - | 1562495..1563211 (+) | 717 | WP_000359520.1 | phage tail protein I | - |
| HPM97_RS07420 (HPM97_07420) | - | 1563214..1564794 (+) | 1581 | WP_000135569.1 | phage tail protein | - |
| HPM97_RS07425 (HPM97_07425) | - | 1564791..1565498 (+) | 708 | WP_001361461.1 | DUF4376 domain-containing protein | - |
| HPM97_RS07430 (HPM97_07430) | - | 1565495..1565950 (+) | 456 | WP_000047948.1 | hypothetical protein | - |
| HPM97_RS07435 (HPM97_07435) | - | 1565964..1566755 (-) | 792 | WP_001130543.1 | nucleotidyltransferase domain-containing protein | - |
| HPM97_RS07440 (HPM97_07440) | - | 1566761..1567888 (-) | 1128 | WP_000592026.1 | slipin family protein | - |
| HPM97_RS07445 (HPM97_07445) | yjbD | 1568417..1568689 (+) | 273 | WP_001207638.1 | DUF3811 domain-containing protein | - |
| HPM97_RS07450 (HPM97_07450) | rluF | 1568690..1569562 (-) | 873 | WP_000936358.1 | 23S rRNA pseudouridine(2604) synthase RluF | - |
| HPM97_RS07455 (HPM97_07455) | - | 1569910..1570857 (+) | 948 | WP_000431660.1 | sugar-binding transcriptional regulator | - |
| HPM97_RS07460 (HPM97_07460) | - | 1570927..1571733 (+) | 807 | WP_001195404.1 | SDR family oxidoreductase | - |
Sequence
Protein
Download Length: 178 a.a. Molecular weight: 18975.00 Da Isoelectric Point: 5.2358
>NTDB_id=448171 HPM97_RS07150 WP_000168305.1 1509392..1509928(-) (ssb) [Escherichia coli strain CE1803A]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF
Nucleotide
Download Length: 537 bp
>NTDB_id=448171 HPM97_RS07150 WP_000168305.1 1509392..1509928(-) (ssb) [Escherichia coli strain CE1803A]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGACAAAGCGACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTAGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGCAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGTTGGGTGGTCGTCAGGGTGGTGGCGCTCCTGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGACGATATTCCGTTCTGA
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGACAAAGCGACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTAGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGCAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGTTGGGTGGTCGTCAGGGTGGTGGCGCTCCTGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGACGATATTCCGTTCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
74.444 |
100 |
0.753 |
| ssb | Glaesserella parasuis strain SC1401 |
57.923 |
100 |
0.596 |
| ssb | Neisseria meningitidis MC58 |
48.066 |
100 |
0.489 |
| ssb | Neisseria gonorrhoeae MS11 |
48.066 |
100 |
0.489 |