Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   CHLWT_RS06300 Genome accession   NZ_CP053828
Coordinates   1238734..1239507 (-) Length   257 a.a.
NCBI ID   WP_112000391.1    Uniprot ID   A0AAV6EFX1
Organism   Campylobacter hyointestinalis subsp. lawsonii strain CHY5     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1233734..1244507
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CHLWT_RS06270 (CHLWT_1227) tatB 1234118..1234555 (+) 438 WP_063997967.1 Sec-independent protein translocase protein TatB -
  CHLWT_RS06275 (CHLWT_1228) tatC 1234555..1235307 (+) 753 WP_059433782.1 twin-arginine translocase subunit TatC -
  CHLWT_RS06280 (CHLWT_1229) queA 1235291..1236322 (+) 1032 WP_112000395.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  CHLWT_RS06285 (CHLWT_1230) - 1236332..1237495 (+) 1164 WP_112000394.1 hypothetical protein -
  CHLWT_RS06290 (CHLWT_1231) - 1237492..1238361 (-) 870 WP_112000393.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  CHLWT_RS06295 (CHLWT_1232) dprB 1238363..1238737 (-) 375 WP_112000392.1 Holliday junction resolvase RuvX Machinery gene
  CHLWT_RS06300 (CHLWT_1233) dprA 1238734..1239507 (-) 774 WP_112000391.1 DNA-processing protein DprA Machinery gene
  CHLWT_RS06305 (CHLWT_1234) - 1239491..1240639 (-) 1149 WP_112000390.1 divergent polysaccharide deacetylase family protein -
  CHLWT_RS06310 (CHLWT_1235) ilvC 1240640..1241662 (-) 1023 WP_034962676.1 ketol-acid reductoisomerase -
  CHLWT_RS06315 (CHLWT_1236) - 1241812..1242624 (+) 813 WP_034962675.1 HDOD domain-containing protein -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28546.87 Da        Isoelectric Point: 5.4417

>NTDB_id=447970 CHLWT_RS06300 WP_112000391.1 1238734..1239507(-) (dprA) [Campylobacter hyointestinalis subsp. lawsonii strain CHY5]
MDFITEIPTSLKLLKKPVDKLYYKGDLGLLDFPKIAIVGSRKCSQYTKNLVYSLALSLKNHGICVVSGAAIGTDCVAHEG
AYPNTIAVFGNGLENIYPAQNKKIIEQIYKNSLALSEYEPNFKATPWSFLERNRIVVALSDAVVVGEADFKSGSMSSARL
ALDMNIPLFVLPQRLGESNGTNELLKNKKAELITDFDEFALLFKSEKTSIQSGDEVLKFIKTNSNFDECYAKFGDILYEY
ELDGKIAIDGIYVRVLQ

Nucleotide


Download         Length: 774 bp        

>NTDB_id=447970 CHLWT_RS06300 WP_112000391.1 1238734..1239507(-) (dprA) [Campylobacter hyointestinalis subsp. lawsonii strain CHY5]
ATGGACTTTATAACTGAAATTCCAACTAGCTTAAAATTGCTAAAAAAACCAGTAGATAAACTTTACTATAAAGGTGATCT
TGGGCTTTTAGACTTTCCAAAAATTGCTATAGTTGGTTCAAGAAAATGTTCGCAATATACTAAAAATTTAGTTTATAGCC
TAGCTCTTAGTCTTAAAAATCATGGTATTTGTGTTGTTAGTGGAGCGGCGATCGGTACTGACTGCGTTGCTCATGAAGGT
GCCTATCCTAATACCATAGCAGTTTTTGGCAACGGGCTTGAAAATATCTATCCTGCTCAAAATAAAAAAATAATAGAGCA
AATTTATAAAAACTCACTTGCCTTAAGTGAGTATGAGCCAAATTTTAAGGCTACACCTTGGAGCTTTTTAGAGCGAAATC
GCATCGTAGTAGCTTTAAGTGACGCGGTTGTCGTGGGCGAAGCTGATTTTAAAAGCGGTTCTATGAGTAGTGCTAGACTC
GCTTTAGATATGAATATACCTCTGTTTGTGCTACCTCAACGCCTAGGCGAAAGCAATGGGACAAATGAGCTTTTAAAAAA
TAAAAAAGCTGAGCTAATCACTGATTTTGATGAATTTGCGCTTTTGTTTAAGAGTGAAAAAACATCTATACAAAGCGGTG
ATGAGGTGCTAAAATTTATAAAAACTAACTCAAATTTCGATGAATGCTATGCTAAATTTGGCGATATTTTATATGAATAC
GAGCTTGATGGCAAAATCGCAATAGATGGCATTTATGTAAGGGTTTTGCAATGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(8-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

57.627

91.829

0.529
  dprA Helicobacter pylori 26695

48.77

94.942

0.463
  dprA Legionella pneumophila strain ERS1305867

35.793

100

0.377