Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   CHLWT_RS06295 Genome accession   NZ_CP053828
Coordinates   1238363..1238737 (-) Length   124 a.a.
NCBI ID   WP_112000392.1    Uniprot ID   A0AAV6EFV9
Organism   Campylobacter hyointestinalis subsp. lawsonii strain CHY5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1233363..1243737
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CHLWT_RS06270 (CHLWT_1227) tatB 1234118..1234555 (+) 438 WP_063997967.1 Sec-independent protein translocase protein TatB -
  CHLWT_RS06275 (CHLWT_1228) tatC 1234555..1235307 (+) 753 WP_059433782.1 twin-arginine translocase subunit TatC -
  CHLWT_RS06280 (CHLWT_1229) queA 1235291..1236322 (+) 1032 WP_112000395.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  CHLWT_RS06285 (CHLWT_1230) - 1236332..1237495 (+) 1164 WP_112000394.1 hypothetical protein -
  CHLWT_RS06290 (CHLWT_1231) - 1237492..1238361 (-) 870 WP_112000393.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  CHLWT_RS06295 (CHLWT_1232) dprB 1238363..1238737 (-) 375 WP_112000392.1 Holliday junction resolvase RuvX Machinery gene
  CHLWT_RS06300 (CHLWT_1233) dprA 1238734..1239507 (-) 774 WP_112000391.1 DNA-processing protein DprA Machinery gene
  CHLWT_RS06305 (CHLWT_1234) - 1239491..1240639 (-) 1149 WP_112000390.1 divergent polysaccharide deacetylase family protein -
  CHLWT_RS06310 (CHLWT_1235) ilvC 1240640..1241662 (-) 1023 WP_034962676.1 ketol-acid reductoisomerase -
  CHLWT_RS06315 (CHLWT_1236) - 1241812..1242624 (+) 813 WP_034962675.1 HDOD domain-containing protein -

Sequence

Protein


Download         Length: 124 a.a.        Molecular weight: 13808.24 Da        Isoelectric Point: 10.0708

>NTDB_id=447969 CHLWT_RS06295 WP_112000392.1 1238363..1238737(-) (dprB) [Campylobacter hyointestinalis subsp. lawsonii strain CHY5]
MIVAIDVGLKRIGVAFAINKNLVLPSEPVLRKNRVQAANDTLKILKEKNAKTLVVGLPKGGYSEDEMQRRIKHFISLVGF
DGEIIYQDEAYSSFEASALVKDKRDGKFDSIAAMIILKRYLGIL

Nucleotide


Download         Length: 375 bp        

>NTDB_id=447969 CHLWT_RS06295 WP_112000392.1 1238363..1238737(-) (dprB) [Campylobacter hyointestinalis subsp. lawsonii strain CHY5]
ATGATAGTAGCAATAGATGTTGGCTTAAAAAGGATAGGTGTTGCTTTTGCTATAAATAAAAATTTAGTTTTACCAAGTGA
GCCAGTGCTTCGTAAAAACCGAGTTCAAGCAGCAAATGACACTCTAAAAATACTAAAAGAAAAAAACGCCAAAACGCTTG
TAGTTGGTCTTCCAAAAGGCGGATATAGCGAAGATGAAATGCAAAGAAGAATAAAGCATTTTATATCGCTTGTTGGATTT
GATGGGGAGATAATATATCAAGATGAAGCGTATTCGAGTTTTGAAGCAAGTGCTTTGGTAAAAGATAAAAGAGATGGTAA
ATTTGATAGTATAGCTGCGATGATAATACTAAAAAGATATTTAGGAATTTTATAA

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-121)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

46.923

100

0.492