Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HPY05_RS11980 Genome accession   NZ_CP053810
Coordinates   2656216..2656749 (-) Length   177 a.a.
NCBI ID   WP_000168287.1    Uniprot ID   A0A2A1YRC3
Organism   Vibrio cholerae strain W6G     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2651216..2661749
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPY05_RS11960 (HPY05_12020) - 2651671..2651988 (-) 318 WP_001887862.1 MSHA biogenesis protein MshK -
  HPY05_RS11965 (HPY05_12025) gspM 2651981..2652631 (-) 651 WP_175247025.1 type II secretion system protein GspM -
  HPY05_RS11970 (HPY05_12030) - 2652628..2654067 (-) 1440 WP_057563366.1 PilN domain-containing protein -
  HPY05_RS11975 (HPY05_12035) csrD 2654080..2656092 (-) 2013 WP_001926798.1 RNase E specificity factor CsrD -
  HPY05_RS11980 (HPY05_12040) ssb 2656216..2656749 (-) 534 WP_000168287.1 single-stranded DNA-binding protein Machinery gene
  HPY05_RS11985 (HPY05_12045) qstR 2657041..2657685 (+) 645 WP_175247026.1 LuxR C-terminal-related transcriptional regulator Regulator
  HPY05_RS11990 (HPY05_12050) galU 2657858..2658730 (+) 873 WP_001920788.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  HPY05_RS11995 (HPY05_12055) uvrA 2658886..2661708 (+) 2823 WP_071179834.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 177 a.a.        Molecular weight: 19644.85 Da        Isoelectric Point: 5.7626

>NTDB_id=447716 HPY05_RS11980 WP_000168287.1 2656216..2656749(-) (ssb) [Vibrio cholerae strain W6G]
MASRGVNKVILIGNLGQDPEVRYMPSGGAVANITIATSETWRDKATGEQKEKTEWHRVTLYGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYSTEVVVQGYNGIMQMLGGRAQQGGMPAQGGMNAPAQQGSWGQPQQPAKQHQPMQQSAPQQYS
QPQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 534 bp        

>NTDB_id=447716 HPY05_RS11980 WP_000168287.1 2656216..2656749(-) (ssb) [Vibrio cholerae strain W6G]
ATGGCAAGCCGTGGCGTGAACAAAGTAATTTTGATTGGTAACTTAGGCCAAGATCCTGAAGTGCGTTATATGCCAAGCGG
CGGCGCAGTAGCGAATATCACCATCGCGACCTCCGAAACCTGGCGTGATAAAGCCACAGGTGAACAGAAGGAAAAAACCG
AATGGCACCGAGTCACTCTGTATGGAAAATTGGCAGAAGTGGCCGGTGAATATTTGCGTAAAGGTTCTCAAGTTTACATT
GAAGGCCAACTGCAAACGCGTAAGTGGCAAGATCAAAGTGGTCAAGATCGCTACTCAACCGAAGTGGTTGTACAAGGCTA
TAACGGCATCATGCAGATGCTGGGTGGACGTGCACAGCAAGGTGGAATGCCAGCCCAAGGCGGTATGAATGCTCCTGCGC
AGCAAGGAAGTTGGGGACAACCACAACAACCGGCGAAGCAGCATCAGCCTATGCAACAATCTGCGCCTCAACAGTACTCG
CAACCGCAGTATAATGAGCCGCCGATGGATTTTGATGACGACATCCCGTTTTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2A1YRC3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

99.435

100

0.994
  ssb Glaesserella parasuis strain SC1401

52.198

100

0.537
  ssb Neisseria meningitidis MC58

47.778

100

0.486
  ssb Neisseria gonorrhoeae MS11

47.778

100

0.486