Detailed information NTG0447684

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: HPY05_RS01110
• Genome accession: NZ_CP053810
• Coordinates: 238620..239627 (+)
• Length: 335 a.a.
• NCBI ID: WP_000224452.1
• Uniprot ID: A0A085RG68
• Organism: Vibrio cholerae strain W6G
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 233620..244627

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HPY05_RS01090 (HPY05_01090)	metJ	233625..233942 (+)	318	WP_000796267.1	met regulon transcriptional regulator MetJ	-
HPY05_RS01095 (HPY05_01095)	-	234053..235330 (-)	1278	WP_001278588.1	malic enzyme-like NAD(P)-binding protein	-
HPY05_RS01100 (HPY05_01100)	rpmE	235637..235855 (-)	219	WP_000643446.1	50S ribosomal protein L31	-
HPY05_RS01105 (HPY05_01105)	priA	236110..238314 (+)	2205	WP_175246728.1	primosomal protein N'	-
HPY05_RS01110 (HPY05_01110)	cytR	238620..239627 (+)	1008	WP_000224452.1	DNA-binding transcriptional regulator CytR	Regulator
HPY05_RS01115 (HPY05_01115)	-	239799..240350 (+)	552	WP_001884022.1	SPOR domain-containing protein	-
HPY05_RS01120 (HPY05_01120)	hslV	240487..241044 (+)	558	WP_000208249.1	ATP-dependent protease subunit HslV	-
HPY05_RS01125 (HPY05_01125)	hslU	241110..242441 (+)	1332	WP_001293366.1	HslU--HslV peptidase ATPase subunit	-
HPY05_RS01130 (HPY05_01130)	-	242545..243462 (+)	918	WP_001066162.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
HPY05_RS01135 (HPY05_01135)	rraA	243537..244052 (+)	516	WP_000456236.1	ribonuclease E activity regulator RraA	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 37018.59 Da
• Isoelectric Point: 7.0759

>NTDB_id=447684 HPY05_RS01110 WP_000224452.1 238620..239627(+) (cytR) [Vibrio cholerae strain W6G]
MATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEEAVLEAGYSPNSLARNLRRNESKTIVAIVPDICDPYFSEIIRG
IEDAAMEHGYLVLLGDSGQQKRRENSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLTQLGHKRIAQISGPQHAALCQFRHQGYQQALRRAGITMNPTYCTFGDFTFEAGAKAVRQLLALPEQPTA
IFCHNDTMAIGAIQEAKRLGLRVPQDLSVVGFDDIQFAQYCDPPLTTISQPRYEIGRQAMLMMLELLRGHDVRAGSRLLE
TKLVVRESAAPPSKK

Nucleotide

• Length: 1008 bp

>NTDB_id=447684 HPY05_RS01110 WP_000224452.1 238620..239627(+) (cytR) [Vibrio cholerae strain W6G]
ATGGCGACAATGAAGGATGTTGCCCAGCTTGCTGGAGTTTCAACCGCGACCGTGTCTCGTGCGTTGATGAATCCAGAGAA
AGTCTCGTCGTCCACTCGTAAACGAGTGGAAGAGGCCGTGCTGGAAGCGGGTTACTCGCCCAATTCTTTGGCGCGCAATT
TGCGCCGTAATGAATCGAAAACCATCGTTGCTATCGTGCCAGATATCTGTGATCCCTACTTTTCTGAGATCATTCGCGGT
ATTGAAGATGCCGCGATGGAGCACGGTTATCTGGTGCTGTTGGGGGATAGTGGTCAACAGAAGCGTCGGGAGAACTCGTT
CGTTAATCTGGTGTTTACCAAACAGGCAGACGGTATGTTGCTGCTGGGGACAGATTTGCCGTTTGATGTGAGTAAACCTG
AGCAGAAAAACCTACCGCCTATGGTGATGGCGTGTGAATTTGCGCCAGAGCTGGAATTGCCAACGGTACACATTGATAAC
CTGACCTCGGCATTTGAGGCGGTAAACTATCTCACTCAGCTTGGGCACAAACGGATTGCGCAGATCTCAGGTCCACAACA
TGCTGCGCTGTGCCAATTCCGTCATCAAGGCTATCAACAGGCGCTGCGTCGTGCTGGCATCACCATGAACCCGACTTACT
GCACTTTTGGCGATTTCACTTTTGAAGCCGGGGCAAAAGCGGTGCGTCAGCTGTTGGCATTGCCTGAGCAGCCGACCGCG
ATTTTCTGTCACAACGATACGATGGCGATTGGCGCAATTCAGGAAGCGAAGCGACTTGGCTTGCGTGTACCGCAAGATCT
CTCCGTGGTCGGTTTTGATGATATTCAGTTTGCCCAGTACTGCGATCCCCCATTAACGACCATTTCGCAGCCGCGTTATG
AGATTGGCCGTCAAGCCATGCTGATGATGCTCGAATTATTGCGTGGACATGATGTGCGTGCAGGATCGCGTCTTTTGGAG
ACCAAGCTGGTCGTGCGTGAGAGTGCTGCGCCGCCAAGCAAGAAGTAA

Domains

Predicted by InterproScan.

• Bacterial regulatory proteins, lacI family (LacI) (3-48)

• Periplasmic binding protein-like domain (Peripla_BP_3) (168-328)

3D structure

• AlphaFold DB: A0A085RG68

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio cholerae C6706	100	100	1
cytR	Vibrio parahaemolyticus RIMD 2210633	90.719	99.701	0.904