Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   HPY08_RS01315 Genome accession   NZ_CP053808
Coordinates   280057..280575 (+) Length   172 a.a.
NCBI ID   WP_000792032.1    Uniprot ID   -
Organism   Vibrio cholerae strain SP7G     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 275057..285575
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPY08_RS01295 (HPY08_01300) - 275274..277751 (-) 2478 WP_162797021.1 penicillin-binding protein 1A -
  HPY08_RS01300 (HPY08_01305) pilM 277894..278910 (+) 1017 WP_000520444.1 type IV pilus assembly protein PilM Machinery gene
  HPY08_RS01305 (HPY08_01310) pilN 278900..279484 (+) 585 WP_162797022.1 PilN domain-containing protein Machinery gene
  HPY08_RS01310 (HPY08_01315) pilO 279477..280067 (+) 591 WP_000157688.1 type 4a pilus biogenesis protein PilO Machinery gene
  HPY08_RS01315 (HPY08_01320) pilP 280057..280575 (+) 519 WP_000792032.1 pilus assembly protein PilP Machinery gene
  HPY08_RS01320 (HPY08_01325) pilQ 280601..282316 (+) 1716 WP_175242463.1 type IV pilus secretin PilQ Machinery gene
  HPY08_RS01325 (HPY08_01330) aroK 282503..283027 (+) 525 WP_000818616.1 shikimate kinase AroK -
  HPY08_RS01330 (HPY08_01335) aroB 283055..284140 (+) 1086 WP_000439804.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19084.25 Da        Isoelectric Point: 10.0857

>NTDB_id=447640 HPY08_RS01315 WP_000792032.1 280057..280575(+) (pilP) [Vibrio cholerae strain SP7G]
MKNKPLGLWLMSLLVLVGCKANQDDLTSYVAQVEREARKEVTKLKPILEFEATPYQQHKGREPFVLPKEALVQNQPLAKA
DCWQPVPRAKNGPLERYPLHQLRLKGVMSSGGSISALVQTPAGSVVKVKAGQYVGINNGKVTRVDDNYLLINETLPDGLG
CWNQRNVKLALK

Nucleotide


Download         Length: 519 bp        

>NTDB_id=447640 HPY08_RS01315 WP_000792032.1 280057..280575(+) (pilP) [Vibrio cholerae strain SP7G]
ATGAAAAATAAGCCACTTGGATTATGGCTGATGAGTTTGCTGGTGTTGGTCGGGTGTAAGGCGAACCAAGATGATTTGAC
CTCATACGTCGCGCAAGTTGAGCGTGAAGCGCGCAAAGAAGTGACTAAGCTCAAACCCATTTTAGAGTTTGAAGCCACGC
CCTATCAGCAGCACAAGGGGCGTGAGCCGTTTGTCTTACCGAAAGAAGCGTTAGTGCAAAACCAACCGCTGGCCAAAGCC
GACTGTTGGCAACCCGTGCCACGTGCGAAAAATGGGCCATTGGAGCGTTATCCATTGCACCAATTGCGCTTAAAAGGGGT
GATGAGCAGCGGGGGCAGTATCTCTGCCTTAGTGCAAACGCCGGCAGGGAGTGTGGTCAAGGTTAAGGCAGGTCAATATG
TCGGAATCAATAATGGCAAAGTCACCCGAGTCGACGACAACTATTTGTTAATTAATGAAACTTTGCCTGATGGCTTAGGG
TGTTGGAATCAGCGTAACGTCAAGCTGGCTTTAAAATAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(25-171)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Vibrio cholerae strain A1552

100

100

1
  pilP Vibrio campbellii strain DS40M4

56.395

100

0.564