Detailed information NTG0447641

Bioinformatically predicted

Overview

• Name: recF
• Type: Machinery gene
• Locus tag: ST90728_RS09640
• Genome accession: NZ_CP065479
• Coordinates: 1858310..1859410 (+)
• Length: 366 a.a.
• NCBI ID: WP_347114162.1
• Uniprot ID: -
• Organism: Streptococcus thermophilus strain 90728
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1853310..1864410

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ST90728_RS09615 (ST90728_09640)	pgsA	1853852..1854394 (-)	543	WP_002947777.1	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	-
ST90728_RS09620 (ST90728_09645)	-	1854407..1855264 (-)	858	WP_180478311.1	helix-turn-helix domain-containing protein	-
ST90728_RS09625 (ST90728_09650)	-	1855323..1856600 (-)	1278	WP_347114160.1	pitrilysin family protein	-
ST90728_RS09630 (ST90728_09655)	-	1856602..1857852 (-)	1251	WP_011681762.1	pitrilysin family protein	-
ST90728_RS09635 (ST90728_09660)	yaaA	1857930..1858307 (+)	378	WP_002947785.1	S4 domain-containing protein YaaA	-
ST90728_RS09640 (ST90728_09665)	recF	1858310..1859410 (+)	1101	WP_347114162.1	DNA replication/repair protein RecF	Machinery gene
ST90728_RS09645 (ST90728_09670)	guaB	1859579..1861060 (-)	1482	WP_014608806.1	IMP dehydrogenase	-
ST90728_RS09650 (ST90728_09675)	trpS	1861237..1862259 (-)	1023	WP_002952292.1	tryptophan--tRNA ligase	-
ST90728_RS09655 (ST90728_09680)	-	1862687..1863559 (+)	873	WP_011227628.1	YitT family protein	-

Sequence

Protein

• Length: 366 a.a.
• Molecular weight: 42163.25 Da
• Isoelectric Point: 8.3913

>NTDB_id=447641 ST90728_RS09640 WP_347114162.1 1858310..1859410(+) (recF) [Streptococcus thermophilus strain 90728]
MWLEKIDIQHFRNYSEASVSFSPHLNIFLGRNAQGKTNILEAIYFLALTRSHRTHLDKELIQFQQNSLKLNGIVHRHSGN
LPLEINLSNKGRVTKVNYLKQAKLSDYIGHMTVVLFAPEDLQLVKGSPSLRRKFIDIDLGQIKPVYLSDLSNYNHVLKQR
NAYLKSTDKVDINFLSVLDEQLADFGARVIKHRLEFIKQLEEEADGHHSILSNQIERLKISYESNIPIQNSKDIREAFLT
TLNQNHKRDIFKKNTGVGPHRDDLKFYINDMNASFGSQGQQRSLILSLKMAEIALIKKVTEEFPILLLDDVMSELDNHRQ
LKLLESIDEEVQTFMTTTSLDHLSNLSPNLKTFLVKNGTIYEKQVD

Nucleotide

• Length: 1101 bp

>NTDB_id=447641 ST90728_RS09640 WP_347114162.1 1858310..1859410(+) (recF) [Streptococcus thermophilus strain 90728]
ATGTGGCTTGAAAAAATTGATATTCAACACTTTAGAAATTATTCTGAAGCCTCTGTGAGCTTTTCACCACATCTCAATAT
TTTTCTTGGACGAAATGCCCAAGGAAAAACAAATATTCTTGAAGCTATCTATTTTCTAGCCTTAACACGTAGTCATCGGA
CCCATTTAGACAAGGAACTAATTCAGTTCCAGCAAAATAGTCTTAAACTAAACGGCATCGTGCATCGTCATAGTGGAAAC
CTACCTCTGGAAATCAACTTATCTAATAAGGGACGAGTTACAAAGGTCAACTACCTCAAGCAGGCAAAATTATCTGATTA
TATAGGTCACATGACGGTGGTACTCTTTGCTCCTGAGGATTTACAACTTGTAAAAGGATCTCCAAGTCTAAGACGTAAAT
TTATAGATATTGATTTAGGACAGATTAAGCCTGTTTACCTCTCAGACCTATCAAATTACAATCATGTTCTTAAGCAGCGT
AATGCCTATCTCAAATCTACTGACAAGGTAGACATTAATTTCCTCTCAGTTTTAGATGAACAGCTTGCCGATTTTGGAGC
ACGAGTTATTAAACATAGACTAGAATTTATCAAGCAATTAGAAGAGGAAGCTGATGGACATCATAGTATTCTCTCAAATC
AGATTGAGCGTCTTAAAATTTCCTATGAATCTAACATCCCAATACAAAATAGCAAAGATATTCGAGAAGCATTTTTAACT
ACATTAAACCAGAATCACAAAAGAGATATCTTCAAAAAGAATACCGGTGTTGGTCCACATAGGGATGATTTAAAATTTTA
CATTAATGACATGAACGCATCTTTCGGTAGTCAAGGGCAGCAACGTAGCCTTATTCTTTCATTAAAAATGGCTGAGATTG
CTCTAATTAAAAAAGTGACGGAGGAATTTCCTATTCTTCTCCTTGACGATGTCATGAGTGAACTTGACAATCACCGTCAA
CTTAAATTGCTAGAAAGTATTGATGAAGAGGTCCAAACTTTCATGACTACAACCTCACTCGATCATCTTAGCAACCTATC
ACCCAATTTAAAGACCTTCTTAGTTAAGAATGGTACTATTTATGAAAAGCAAGTCGATTAA

Domains

Predicted by InterProScan.

• RecF/RecN/SMC N terminal domain (SMC_N) (3-359)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recF	Streptococcus pneumoniae R6	65.363	97.814	0.639
recF	Bacillus subtilis subsp. subtilis str. 168	42.935	100	0.432