Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   HPY08_RS01320 Genome accession   NZ_CP053808
Coordinates   280601..282316 (+) Length   571 a.a.
NCBI ID   WP_175242463.1    Uniprot ID   -
Organism   Vibrio cholerae strain SP7G     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 275601..287316
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPY08_RS01300 (HPY08_01305) pilM 277894..278910 (+) 1017 WP_000520444.1 type IV pilus assembly protein PilM Machinery gene
  HPY08_RS01305 (HPY08_01310) pilN 278900..279484 (+) 585 WP_162797022.1 PilN domain-containing protein Machinery gene
  HPY08_RS01310 (HPY08_01315) pilO 279477..280067 (+) 591 WP_000157688.1 type 4a pilus biogenesis protein PilO Machinery gene
  HPY08_RS01315 (HPY08_01320) pilP 280057..280575 (+) 519 WP_000792032.1 pilus assembly protein PilP Machinery gene
  HPY08_RS01320 (HPY08_01325) pilQ 280601..282316 (+) 1716 WP_175242463.1 type IV pilus secretin PilQ Machinery gene
  HPY08_RS01325 (HPY08_01330) aroK 282503..283027 (+) 525 WP_000818616.1 shikimate kinase AroK -
  HPY08_RS01330 (HPY08_01335) aroB 283055..284140 (+) 1086 WP_000439804.1 3-dehydroquinate synthase -
  HPY08_RS01335 (HPY08_01340) - 284195..285670 (+) 1476 WP_114716551.1 AAA family ATPase -
  HPY08_RS01340 (HPY08_01345) - 285740..286573 (+) 834 WP_000744680.1 Dam family site-specific DNA-(adenine-N6)-methyltransferase -

Sequence

Protein


Download         Length: 571 a.a.        Molecular weight: 62368.54 Da        Isoelectric Point: 4.6119

>NTDB_id=447641 HPY08_RS01320 WP_175242463.1 280601..282316(+) (pilQ) [Vibrio cholerae strain SP7G]
MKNGLKTYVAQTWLTLWVGLALCASSMVFSVESATANQLENIDFRVNKEKAAVLIVELASPSAVVDVQKVQEGLSIELLK
TDVADDKLYLLDVKDFSTPVESVEVFRKEPSTQLVVTVDGEFQHDYTLKGKYLEVVISKLKADEKPKPKSVLEKEGKLIS
INFQDIPVRNVLQLIADYNGFNLVVSDSVVGNLTLRLDGVPWQQVLDIILQVKGLDKRVDGNVILIAPKEELDLREKQAL
EKARLAEELGDLKSEIIKINFAKASDIAAMIGGEGNVNMLSERGSISIDERTNSLLIRELPDNIAVIREIIESLDIPVKQ
VQIEARIVTVKEGNLEELGVRWGVMSTNGSHSVGGSIESNLWQKGLLADDEFPVDEFLNVNLASTSANASSIAFQVAKLG
SGTLLDLELSALQNESKAEIISSPRLITTNKQPAYIEQGTEIPYLESSSSGASTVAFKKAVLSLKVTPQITPDNRLVLDL
SVTQDRRGETVKTGTGEAVSIDTQRIGTQVLVNNGETVVLGGIFQHSINNSVDKVPLLGDLPVLGALFRRTYEQMGKSEL
LIFVTPKVVIQ

Nucleotide


Download         Length: 1716 bp        

>NTDB_id=447641 HPY08_RS01320 WP_175242463.1 280601..282316(+) (pilQ) [Vibrio cholerae strain SP7G]
ATGAAAAATGGATTGAAAACTTATGTCGCACAGACTTGGCTGACCTTGTGGGTTGGTTTGGCACTTTGTGCTTCTTCCAT
GGTGTTTAGTGTTGAATCCGCTACCGCCAACCAGTTGGAAAACATCGACTTTCGGGTCAACAAAGAGAAGGCGGCGGTCT
TAATTGTCGAATTGGCTTCGCCATCGGCGGTCGTGGATGTGCAAAAAGTCCAAGAAGGGCTGAGTATTGAGCTACTGAAA
ACCGATGTGGCGGATGACAAGCTGTATCTGCTTGATGTGAAAGATTTTTCGACACCTGTTGAGAGCGTGGAAGTATTCCG
TAAAGAGCCAAGCACACAACTGGTTGTGACTGTCGATGGGGAGTTTCAGCACGATTATACCTTGAAAGGAAAATACCTTG
AAGTCGTGATCAGTAAACTCAAAGCTGATGAAAAGCCTAAGCCCAAGAGTGTCTTGGAAAAAGAAGGCAAGCTTATCTCA
ATTAACTTCCAAGATATTCCGGTGCGTAACGTACTGCAACTGATTGCCGATTATAACGGTTTCAACTTAGTGGTTTCCGA
TTCTGTGGTGGGTAACCTGACTTTACGCTTGGATGGCGTGCCTTGGCAGCAAGTGTTGGACATTATTCTGCAAGTCAAAG
GGCTCGATAAGCGGGTCGATGGCAATGTGATTTTGATTGCGCCGAAAGAGGAACTCGACTTGCGCGAGAAACAAGCGCTC
GAAAAAGCCCGTTTAGCAGAAGAGTTGGGCGATTTAAAATCAGAAATCATCAAGATTAACTTTGCCAAAGCGTCTGACAT
TGCGGCGATGATCGGCGGTGAAGGCAATGTGAACATGTTGTCTGAACGAGGTTCGATCAGCATCGACGAACGAACTAACT
CGCTATTGATCCGAGAGCTGCCCGATAATATTGCTGTGATCCGCGAGATCATTGAATCGCTGGATATTCCGGTCAAACAA
GTTCAAATCGAAGCGCGGATTGTCACCGTCAAAGAAGGTAACTTGGAGGAGCTGGGAGTACGCTGGGGCGTGATGTCGAC
CAATGGTAGCCACTCGGTCGGAGGAAGCATAGAGAGTAACTTATGGCAAAAAGGGTTATTGGCGGATGATGAATTTCCGG
TGGATGAATTCTTAAATGTGAATTTGGCTTCCACCTCTGCCAATGCGTCTTCGATTGCTTTCCAAGTCGCTAAATTGGGC
TCGGGTACGTTGTTGGATTTGGAGCTTTCAGCATTACAAAATGAATCGAAAGCCGAAATCATCTCTAGCCCTCGCTTGAT
TACTACCAATAAACAGCCTGCCTATATTGAGCAAGGTACTGAGATCCCTTATCTGGAATCGTCTTCCAGTGGTGCCTCTA
CGGTCGCGTTTAAAAAAGCGGTATTGAGCTTGAAGGTGACACCACAAATCACCCCAGATAACCGCTTGGTGCTCGACTTG
AGTGTGACCCAAGACCGACGCGGTGAAACGGTGAAAACCGGTACGGGTGAAGCGGTTTCTATTGATACTCAGCGTATTGG
CACTCAAGTGTTGGTGAATAACGGAGAAACTGTGGTGTTGGGTGGCATTTTCCAACACAGCATCAATAATTCGGTAGATA
AGGTGCCACTGCTGGGGGACTTGCCTGTTTTGGGCGCGTTATTCAGACGAACCTATGAGCAAATGGGCAAAAGTGAACTG
CTGATTTTTGTCACGCCGAAAGTGGTCATTCAATAA

Domains

Predicted by InterproScan.

Bacterial type II/III secretion system short domain (Secretin_N)

(255-320)

Bacterial type II and III secretion system protein (Secretin)

(411-569)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Vibrio cholerae strain A1552

99.825

100

0.998
  pilQ Vibrio cholerae O1 biovar El Tor strain E7946

99.825

100

0.998
  pilQ Vibrio campbellii strain DS40M4

78.364

96.322

0.755
  pilQ Legionella pneumophila strain Lp02

42.778

94.571

0.405
  pilQ Legionella pneumophila strain ERS1305867

42.778

94.571

0.405
  pilQ Acinetobacter baumannii D1279779

37.647

100

0.392
  pilQ Acinetobacter baumannii strain A118

37.647

100

0.392
  comQ Acinetobacter baylyi ADP1

39.298

99.825

0.392
  pilQ Pseudomonas aeruginosa PAK

39.344

96.147

0.378