Detailed information    

insolico Bioinformatically predicted

Overview

Name   tfoX   Type   Regulator
Locus tag   HPY07_RS08470 Genome accession   NZ_CP053806
Coordinates   1888857..1889444 (-) Length   195 a.a.
NCBI ID   WP_001005366.1    Uniprot ID   A0A0K9UTP3
Organism   Vibrio cholerae strain SP6G     
Function   master regulator of natural competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1883857..1894444
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPY07_RS08450 (HPY07_08460) - 1884085..1885350 (-) 1266 WP_071180334.1 YdgA family protein -
  HPY07_RS08455 (HPY07_08465) - 1885573..1887528 (+) 1956 WP_114808170.1 ATP-binding protein -
  HPY07_RS08460 (HPY07_08470) - 1887525..1888022 (+) 498 WP_001031964.1 response regulator -
  HPY07_RS08465 (HPY07_08475) - 1888213..1888761 (+) 549 WP_001961416.1 hypothetical protein -
  HPY07_RS08470 (HPY07_08480) tfoX 1888857..1889444 (-) 588 WP_001005366.1 TfoX/Sxy family DNA transformation protein Regulator
  HPY07_RS08475 (HPY07_08485) - 1889822..1890742 (+) 921 WP_000019000.1 HDOD domain-containing protein -
  HPY07_RS08480 (HPY07_08490) - 1890763..1891668 (+) 906 WP_000948497.1 lysine exporter LysO family protein -
  HPY07_RS08485 (HPY07_08495) - 1891857..1892366 (+) 510 WP_000826868.1 hypothetical protein -
  HPY07_RS08490 (HPY07_08500) panP 1892476..1894122 (+) 1647 WP_057554318.1 pyridoxal-dependent aspartate 1-decarboxylase PanP -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 22816.03 Da        Isoelectric Point: 6.9718

>NTDB_id=447608 HPY07_RS08470 WP_001005366.1 1888857..1889444(-) (tfoX) [Vibrio cholerae strain SP6G]
MNEQQFFDYVTKFGAYQKRSMFGGIGLFQHDAMYVLVSEDRIFVRGGEELDPELLALGCEKYRHVKKQTTATVNYYDITE
LYEQHHPELDSIIERSIQFSVNQREFQRSAASRRLRDLPNMQLTLERMVKKAGIDDVETFMSLGAPEVFNKVRQAYGSDV
DVKLLWKFAGAIEGIHWKLLQEPRKRQLLESCQQR

Nucleotide


Download         Length: 588 bp        

>NTDB_id=447608 HPY07_RS08470 WP_001005366.1 1888857..1889444(-) (tfoX) [Vibrio cholerae strain SP6G]
ATGAATGAGCAACAGTTTTTCGACTACGTAACTAAGTTTGGCGCCTACCAAAAACGCTCGATGTTTGGTGGTATTGGCTT
GTTTCAACACGACGCTATGTATGTGTTGGTCAGTGAAGACCGCATTTTTGTGCGTGGTGGAGAAGAGCTCGACCCTGAGC
TCTTGGCCTTAGGGTGCGAGAAATATCGCCATGTTAAAAAACAGACAACGGCAACCGTAAACTATTACGACATCACTGAA
CTGTATGAGCAACATCACCCTGAGCTAGACTCGATCATTGAACGCTCGATTCAGTTTTCTGTGAATCAGCGGGAATTTCA
ACGCTCAGCAGCCAGTCGTCGTCTACGGGATTTACCCAATATGCAACTGACTTTGGAGCGCATGGTAAAAAAAGCGGGCA
TTGACGATGTGGAAACTTTTATGAGCCTCGGTGCGCCAGAAGTGTTTAATAAGGTGCGTCAAGCTTATGGAAGTGATGTC
GATGTAAAACTACTGTGGAAGTTTGCAGGTGCGATTGAAGGCATTCACTGGAAACTGCTGCAAGAGCCGCGTAAGCGCCA
ACTGTTAGAAAGTTGTCAGCAGCGTTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(112-190)

TfoX N-terminal domain (TfoX_N)

(9-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0K9UTP3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.