Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   ST90728_RS02295 Genome accession   NZ_CP065479
Coordinates   419934..420893 (+) Length   319 a.a.
NCBI ID   WP_141327234.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain 90728     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 414934..425893
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ST90728_RS02285 (ST90728_02300) metG 415458..417461 (+) 2004 WP_347114315.1 methionine--tRNA ligase -
  ST90728_RS02290 (ST90728_02305) - 417739..418635 (-) 897 WP_347114317.1 LysR family transcriptional regulator -
  ST90728_RS02295 (ST90728_02310) coiA 419934..420893 (+) 960 WP_141327234.1 competence protein CoiA family protein Machinery gene
  ST90728_RS02300 (ST90728_02315) pepF 420904..422709 (+) 1806 WP_180476813.1 oligoendopeptidase F Regulator
  ST90728_RS02305 (ST90728_02320) - 422891..423598 (+) 708 WP_002946027.1 O-methyltransferase -
  ST90728_RS02310 (ST90728_02325) - 423660..424802 (+) 1143 WP_347114320.1 peptidyl-prolyl cis-trans isomerase -

Sequence

Protein


Download         Length: 319 a.a.        Molecular weight: 38099.01 Da        Isoelectric Point: 9.1721

>NTDB_id=447564 ST90728_RS02295 WP_141327234.1 419934..420893(+) (coiA) [Streptococcus thermophilus strain 90728]
MLIAKNQKGLLVSALENGLNREETYRCPGCQGIVLLRQGKVICPHFAHKSLQDCQFFSENESAQHLSLKATVYQSLDNHG
ERVCIEKVLPELGQIADLFVGDSLALEVQCSRLSQKRLRERTLAYHQIGYEVRWLLGQELWLGQRLTDLQRDFLYFTTKI
GFHLWELDWEREEIRLKYLIYEDIFGRVYYLTKTWSLIENLMTILRFPYQVRKVETYQVTQRKKVSHVIQRELMGKNPRW
MRRQEEAYLKGMNLLSLSDQDFFPQVRFPESKHGFVQIRLSIDGFEKLFMQYYRKRDFSYKQTLCPPNFYAKIVDYRHN

Nucleotide


Download         Length: 960 bp        

>NTDB_id=447564 ST90728_RS02295 WP_141327234.1 419934..420893(+) (coiA) [Streptococcus thermophilus strain 90728]
ATGTTAATCGCTAAAAATCAGAAAGGGCTCTTGGTTTCGGCTCTTGAAAATGGGTTGAATCGTGAGGAAACTTATAGGTG
CCCTGGCTGTCAAGGAATTGTATTGTTGAGACAGGGAAAGGTGATATGCCCGCATTTTGCCCATAAATCTTTGCAGGATT
GTCAGTTTTTCTCAGAAAATGAATCGGCCCAACATTTATCCCTAAAAGCCACTGTGTATCAATCCCTGGACAATCATGGT
GAAAGAGTTTGTATTGAAAAGGTTCTGCCTGAGTTAGGTCAGATTGCGGATTTATTCGTTGGAGATTCCTTAGCCTTGGA
AGTCCAGTGTTCTCGTTTATCACAGAAACGTTTAAGAGAGCGGACTTTAGCTTACCATCAAATAGGTTACGAGGTACGAT
GGCTTTTGGGGCAAGAACTGTGGTTGGGACAGCGTTTAACAGATCTACAGCGTGATTTTCTTTATTTTACAACTAAGATA
GGTTTCCACCTTTGGGAACTTGATTGGGAGAGGGAAGAGATTAGACTTAAGTATCTCATCTATGAGGATATTTTTGGGAG
AGTTTATTACTTAACTAAGACCTGGTCTTTAATAGAAAATCTCATGACCATATTACGTTTTCCTTATCAGGTCAGAAAGG
TGGAGACTTATCAAGTGACTCAGCGAAAGAAAGTCTCACATGTTATTCAACGGGAATTAATGGGGAAAAATCCAAGATGG
ATGAGAAGGCAGGAGGAGGCTTATCTTAAAGGGATGAATTTGTTAAGTTTGTCCGATCAGGATTTTTTTCCACAAGTGCG
GTTTCCTGAGTCTAAGCATGGATTTGTCCAAATTAGATTATCTATTGATGGTTTTGAAAAGCTTTTCATGCAGTATTATC
GAAAAAGGGATTTTTCTTACAAGCAAACCCTGTGCCCTCCCAACTTTTATGCTAAAATAGTAGATTATAGACACAATTAA

Domains

Predicted by InterProScan.

Competence protein CoiA-like family (CoiA_nuc)

(1-264)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Streptococcus pneumoniae TIGR4

45.338

97.492

0.442
  coiA Streptococcus mitis NCTC 12261

45.338

97.492

0.442
  coiA Streptococcus pneumoniae Rx1

45.016

97.492

0.439
  coiA Streptococcus pneumoniae D39

45.016

97.492

0.439
  coiA Streptococcus pneumoniae R6

45.016

97.492

0.439