Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   ST90728_RS02300 Genome accession   NZ_CP065479
Coordinates   420904..422709 (+) Length   601 a.a.
NCBI ID   WP_180476813.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain 90728     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 415904..427709
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ST90728_RS02290 (ST90728_02305) - 417739..418635 (-) 897 WP_347114317.1 LysR family transcriptional regulator -
  ST90728_RS02295 (ST90728_02310) coiA 419934..420893 (+) 960 WP_141327234.1 competence protein CoiA family protein Machinery gene
  ST90728_RS02300 (ST90728_02315) pepF 420904..422709 (+) 1806 WP_180476813.1 oligoendopeptidase F Regulator
  ST90728_RS02305 (ST90728_02320) - 422891..423598 (+) 708 WP_002946027.1 O-methyltransferase -
  ST90728_RS02310 (ST90728_02325) - 423660..424802 (+) 1143 WP_347114320.1 peptidyl-prolyl cis-trans isomerase -

Sequence

Protein


Download         Length: 601 a.a.        Molecular weight: 69184.38 Da        Isoelectric Point: 4.6082

>NTDB_id=447565 ST90728_RS02300 WP_180476813.1 420904..422709(+) (pepF) [Streptococcus thermophilus strain 90728]
MSDNRCHLEEKYTWDLTTIFATDADWETEYESIVQDLKKASSFAGHLLDSAKNLLEATELYMSLMRRLEKIYVYASMKND
QDTTVGLYQEYNAKASNLYSQLSEAFAYFEPEFMALEAEKLVSFKEQEPGLGLYDHYFERLLANKDHVLSQEAEELLATA
GDIFNGPTDTFNVLDNADILFPWVSDGQGDVIELTHGNFTTLMESKNREVRKGAYEAMYRTYEQFQHTYAQTLQGVVKVH
NYMAKVRHYNSARHAALAANFIPESVYDSLLESVNKHLPLLHRYLDLRKKVLELDKLKMYDVYAPLSETETALTYEEALK
KAEEVLAIFGEEYSKGVHAAFTERWIDVHPNKGKRSGAYSGGAYDTNAFMLLNWQDTLDNLFTLVHETGHSLHSTFTRQT
QPYVYGDYPIFLAEIASTTNENILTETLLKEVNDDKTRFAILNHYLDGFKGTVFRQTQFAEFEHAIHEADASGQILTADF
MNKLYADLNEKYYNLKAEDNYEIQFEWERIPHFYMNYYVYQYATGFAAASYLAEKIVHGNEEDKEAYLTYLKAGSSDYPL
EVIKKAGVDMTNTDYLDAAFKVFEDRLVELEALVEKGVHLS

Nucleotide


Download         Length: 1806 bp        

>NTDB_id=447565 ST90728_RS02300 WP_180476813.1 420904..422709(+) (pepF) [Streptococcus thermophilus strain 90728]
ATGTCAGACAATCGTTGTCATTTAGAAGAAAAATATACATGGGATTTGACCACCATTTTTGCGACAGACGCTGATTGGGA
GACTGAATATGAAAGCATTGTTCAGGATTTGAAGAAGGCTAGTTCCTTTGCTGGTCACCTCTTGGACTCAGCCAAGAATT
TGCTTGAGGCAACAGAACTTTATATGAGTTTGATGCGTCGTTTGGAAAAAATCTACGTTTATGCGTCAATGAAAAATGAC
CAAGATACAACGGTAGGTCTTTACCAAGAGTACAATGCCAAAGCCTCAAACCTATACTCACAGTTGAGTGAAGCCTTTGC
CTACTTTGAGCCTGAATTTATGGCTTTGGAAGCTGAAAAATTAGTATCCTTCAAAGAACAAGAGCCAGGTCTTGGACTTT
ATGACCACTATTTCGAACGTCTTTTGGCAAACAAAGACCACGTTCTTTCTCAAGAAGCAGAAGAACTCTTGGCAACAGCT
GGTGATATTTTTAACGGTCCAACGGATACCTTCAACGTCTTGGATAATGCTGATATCCTCTTTCCATGGGTATCGGATGG
TCAAGGGGATGTGATTGAGTTGACACATGGTAACTTTACCACCCTCATGGAATCTAAGAATCGTGAAGTCCGTAAGGGAG
CCTATGAAGCTATGTATAGAACTTATGAGCAGTTCCAACATACCTATGCACAAACACTTCAAGGCGTTGTCAAGGTTCAC
AATTATATGGCTAAAGTTCGTCACTATAATTCGGCACGTCATGCAGCACTTGCAGCTAACTTTATTCCAGAAAGTGTTTA
CGACTCACTCTTAGAATCAGTGAATAAGCATTTGCCACTCTTGCACCGTTACCTTGATTTGCGTAAGAAGGTATTGGAAC
TTGATAAGCTTAAGATGTATGATGTTTATGCACCACTTTCTGAGACAGAGACTGCTCTTACTTATGAAGAAGCCCTCAAG
AAAGCAGAGGAAGTCTTGGCTATCTTTGGTGAGGAGTATAGTAAAGGGGTTCATGCAGCCTTTACGGAACGTTGGATTGA
TGTTCACCCTAACAAAGGGAAACGTTCAGGTGCCTACTCAGGTGGTGCCTATGATACCAATGCTTTCATGCTTTTGAACT
GGCAAGACACTTTGGATAATCTCTTTACCTTGGTTCACGAGACTGGCCACAGTTTGCATTCAACTTTCACACGTCAGACA
CAACCATATGTTTACGGAGATTACCCAATCTTCTTGGCTGAAATTGCGTCTACAACTAATGAAAATATCTTGACAGAAAC
ACTTCTTAAAGAAGTTAACGATGATAAGACACGTTTTGCTATCCTTAACCACTATTTAGATGGATTTAAGGGAACCGTCT
TCCGTCAAACGCAATTTGCCGAGTTTGAGCATGCTATCCATGAAGCGGATGCATCGGGTCAAATCTTGACAGCAGACTTC
ATGAATAAGCTTTATGCAGACCTCAATGAGAAATACTATAACCTTAAAGCTGAAGATAACTATGAAATTCAGTTTGAGTG
GGAACGTATTCCGCATTTCTACATGAATTACTATGTTTATCAATATGCTACAGGATTTGCAGCAGCAAGCTACTTGGCAG
AAAAGATTGTTCACGGTAATGAAGAAGATAAAGAAGCTTACCTTACGTACCTTAAGGCAGGTAGCTCAGACTATCCTTTG
GAAGTCATCAAGAAAGCTGGTGTTGACATGACCAACACTGACTACTTGGATGCAGCTTTCAAGGTTTTCGAAGACCGCTT
AGTTGAATTGGAAGCCTTGGTTGAAAAAGGTGTTCATCTTTCTTAA

Domains

Predicted by InterProScan.

Peptidase family M3 (Peptidase_M3)

(202-581)

Oligopeptidase F (Peptidase_M3_N)

(112-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

95.84

100

0.958