Detailed information    

insolico Bioinformatically predicted

Overview

Name   tfoX   Type   Regulator
Locus tag   HPY06_RS08295 Genome accession   NZ_CP053804
Coordinates   1848396..1848983 (-) Length   195 a.a.
NCBI ID   WP_001005366.1    Uniprot ID   A0A0K9UTP3
Organism   Vibrio cholerae strain SL6Y     
Function   master regulator of natural competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1843396..1853983
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPY06_RS08275 (HPY06_08280) - 1843624..1844889 (-) 1266 WP_114742106.1 YdgA family protein -
  HPY06_RS08280 (HPY06_08285) - 1845112..1847067 (+) 1956 WP_175230557.1 ATP-binding protein -
  HPY06_RS08285 (HPY06_08290) - 1847064..1847561 (+) 498 WP_001031964.1 response regulator -
  HPY06_RS08290 (HPY06_08295) - 1847752..1848300 (+) 549 WP_001232641.1 hypothetical protein -
  HPY06_RS08295 (HPY06_08300) tfoX 1848396..1848983 (-) 588 WP_001005366.1 TfoX/Sxy family DNA transformation protein Regulator
  HPY06_RS08300 (HPY06_08305) - 1849361..1850281 (+) 921 WP_000019000.1 HDOD domain-containing protein -
  HPY06_RS08305 (HPY06_08310) - 1850302..1851207 (+) 906 WP_000948497.1 lysine exporter LysO family protein -
  HPY06_RS08310 (HPY06_08315) - 1851396..1851905 (+) 510 WP_000826868.1 hypothetical protein -
  HPY06_RS08315 (HPY06_08320) panP 1852015..1853661 (+) 1647 WP_057554318.1 pyridoxal-dependent aspartate 1-decarboxylase PanP -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 22816.03 Da        Isoelectric Point: 6.9718

>NTDB_id=447560 HPY06_RS08295 WP_001005366.1 1848396..1848983(-) (tfoX) [Vibrio cholerae strain SL6Y]
MNEQQFFDYVTKFGAYQKRSMFGGIGLFQHDAMYVLVSEDRIFVRGGEELDPELLALGCEKYRHVKKQTTATVNYYDITE
LYEQHHPELDSIIERSIQFSVNQREFQRSAASRRLRDLPNMQLTLERMVKKAGIDDVETFMSLGAPEVFNKVRQAYGSDV
DVKLLWKFAGAIEGIHWKLLQEPRKRQLLESCQQR

Nucleotide


Download         Length: 588 bp        

>NTDB_id=447560 HPY06_RS08295 WP_001005366.1 1848396..1848983(-) (tfoX) [Vibrio cholerae strain SL6Y]
ATGAATGAGCAACAGTTTTTCGACTACGTAACTAAGTTTGGCGCCTACCAAAAACGCTCGATGTTTGGTGGTATTGGCTT
GTTTCAACACGACGCTATGTATGTGTTGGTCAGTGAAGACCGCATTTTTGTGCGTGGTGGAGAAGAGCTCGACCCTGAGC
TCTTGGCCTTAGGGTGCGAGAAATATCGCCATGTTAAAAAACAGACAACGGCAACCGTAAACTATTACGACATCACTGAA
CTGTATGAGCAACATCACCCTGAGCTAGACTCGATCATTGAACGCTCGATTCAGTTTTCTGTGAATCAGCGGGAATTTCA
ACGCTCAGCAGCCAGTCGTCGTCTACGGGATTTACCCAATATGCAACTGACTTTGGAGCGTATGGTAAAAAAAGCGGGCA
TTGACGATGTGGAAACTTTTATGAGTCTCGGTGCGCCAGAAGTGTTTAATAAGGTGCGTCAAGCTTATGGAAGTGATGTC
GATGTAAAACTACTGTGGAAGTTTGCGGGTGCGATTGAAGGCATTCACTGGAAATTGCTGCAAGAGCCGCGTAAGCGCCA
ACTGTTAGAAAGTTGTCAGCAGCGTTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(112-190)

TfoX N-terminal domain (TfoX_N)

(9-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0K9UTP3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.