Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   HPY16_RS11310 Genome accession   NZ_CP053802
Coordinates   2526401..2527045 (+) Length   214 a.a.
NCBI ID   WP_001188318.1    Uniprot ID   A0A085QXE6
Organism   Vibrio cholerae strain L6G     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2521401..2532045
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPY16_RS11295 (HPY16_11290) - 2521988..2523427 (-) 1440 WP_000743256.1 PilN domain-containing protein -
  HPY16_RS11300 (HPY16_11295) csrD 2523440..2525452 (-) 2013 WP_175248267.1 RNase E specificity factor CsrD -
  HPY16_RS11305 (HPY16_11300) ssb 2525576..2526109 (-) 534 WP_000168287.1 single-stranded DNA-binding protein Machinery gene
  HPY16_RS11310 (HPY16_11305) qstR 2526401..2527045 (+) 645 WP_001188318.1 LuxR C-terminal-related transcriptional regulator Regulator
  HPY16_RS11315 (HPY16_11310) galU 2527218..2528090 (+) 873 WP_001920788.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  HPY16_RS11320 (HPY16_11315) uvrA 2528246..2531068 (+) 2823 WP_175248268.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24722.55 Da        Isoelectric Point: 9.6461

>NTDB_id=447528 HPY16_RS11310 WP_001188318.1 2526401..2527045(+) (qstR) [Vibrio cholerae strain L6G]
MQRANYARTIYLLTTQPKTLHPGVQAAIEQLNLPVPVIEPERLLREYQSDKHKILLLDHAENGLIRQQLGPLKLTSPYFE
TILFNVEKRLRTEDLLTFGNLKGLFYANEDTGFIAHGLGEIINGQNWLPRHVSSQLLHYYRYAFQSHQVQATVDLTAREI
QILRCLQTGASNMQIAENLFISEFTVKSHLYQIFKKLNVKNRVKAIAWVNQNLL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=447528 HPY16_RS11310 WP_001188318.1 2526401..2527045(+) (qstR) [Vibrio cholerae strain L6G]
ATGCAACGAGCCAACTATGCACGCACGATTTATTTATTAACGACACAGCCGAAAACGTTACATCCCGGAGTTCAAGCCGC
CATTGAGCAATTGAACCTGCCCGTCCCGGTGATTGAACCAGAACGCTTATTGCGCGAGTATCAATCCGATAAACACAAAA
TATTGTTGCTCGACCATGCGGAAAATGGCCTGATTCGCCAGCAATTGGGTCCCCTCAAGCTTACCAGCCCGTACTTCGAA
ACCATCTTGTTTAATGTCGAGAAACGGTTAAGAACGGAAGATCTGCTCACTTTTGGAAACCTCAAAGGTCTGTTTTATGC
CAATGAAGACACAGGCTTTATTGCCCACGGTCTTGGGGAGATCATTAATGGCCAAAACTGGCTACCTCGCCATGTCAGCA
GTCAGTTGCTGCATTACTATCGTTACGCTTTCCAAAGCCATCAAGTTCAAGCCACGGTCGATTTGACTGCACGTGAAATT
CAGATCCTGCGCTGTTTACAAACTGGTGCATCGAATATGCAAATCGCTGAGAATTTATTTATTAGTGAGTTCACGGTGAA
ATCGCATCTTTATCAGATATTTAAAAAGCTAAACGTGAAAAATCGAGTCAAAGCGATCGCTTGGGTTAATCAAAATTTAC
TGTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(155-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A085QXE6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio cholerae strain A1552

98.598

100

0.986
  qstR Vibrio campbellii strain DS40M4

52.336

100

0.523
  qstR Vibrio parahaemolyticus RIMD 2210633

51.628

100

0.519